Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq67 224 9e-54 seq48 102 8e-17 >seq67 Length=8586409 Score = 224 bits (248), Expect = 9e-54 Identities = 499/743 (67%), Gaps = 13/743 (2%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| ||| | ||||| |||| |||||||| |||||||| || | | | Sbjct 7038762 TTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTCATCCTCC 7038821 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC 16046 ||| || | ||||||| ||||| || |||| | ||||| | || || ||| | Sbjct 7038822 CTTGTAGTTAAATATTCTCCATGAAGTCAAGTGCATTTTCTACTCAGAAGGCCTTACTGA 7038881 Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 | ||| |||| || | ||| || |||| ||||| || || | |||||||| || Sbjct 7038882 AATCCAGCTCCAGCATGAGTCTGTCAGCCATGAATTCAATGCACCGCGTCATTAAAGTAC 7038941 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAA 16166 || |||| || || | || | || | || ||||| | || | | |||| | | Sbjct 7038942 AGCTCATCCCAATGAGCTTCCCTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTAGCCTGA 7039001 Query 16167 CCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG----TGT 16222 | || | ||||||| ||| | ||| |||| || ||| ||||| || ||| Sbjct 7039002 CAGCATTGGTGATTATTTCTTTCACT-CACTGCTT---GGAAGGTTTGCGTAGCTGGTGT 7039057 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 || |||| || || ||||| | ||| ||||| || | || || || || | ||||| Sbjct 7039058 TTGAACACTAGGCAGGCAAAGTGACAGTGCAAACCCTTATCTCTGCTGATAAGTTCGTTG 7039117 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 || ||||| || || ||||| ||||||| ||| || | ||| ||||| ||||| ||| Sbjct 7039118 GAGAATGTGAGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATCAATGCAAAAGAA 7039177 Query 16343 CCAGAAAAGAATATACCTT-CAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--T 16399 ||||||||||| || |||| ||||||||||||| || || | | || || | || Sbjct 7039178 CCAGAAAAGAAGATTCCTTCCAACTGCGGCAAAAGCCACAACACTTTCTCCACAGGTGAC 7039237 Query 16400 CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 || || | | || ||||| | ||||| | ||| || || |||| |||| Sbjct 7039238 CTCTTGGTCC--TCGATCCAATGCAAGGCCCAGTCTGCCTTCCTCTTGGCACAAGGCATG 7039295 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 |||| | ||||| || | | ||| |||| ||| |||| ||| ||||| || || Sbjct 7039296 GTCTCAGTGGCATTGAAAAGAAAATCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATG 7039355 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCAT 16579 || | |||||||||||| ||||| || | ||||| | || || || | || || || Sbjct 7039356 AGGAGACTATACATTTCAGAATGTATGTGTTCCATGGTAATTTGGAAGCTGTAGAATCAG 7039415 Query 16580 CTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATT 16639 | |||||| || || ||||| | || | || | |||||||| || ||||| Sbjct 7039416 CGGGCTTCGATGATCTGAACTTCTTGGCTAACGCGCTCCACCAAGTTTTCATTTACTATG 7039475 Query 16640 CCATCGCTAGCTGCAAAAAACGC 16662 |||||||| |||||||| || || Sbjct 7039476 CCATCGCTTGCTGCAAAGAAAGC 7039498 >seq48 Length=11824846 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 || ||||||| ||| | | || ||||||||| | || | | ||| |||| | Sbjct 3096218 TTCAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGTTTTCCGCCATCACTGCAAAAC 3096159 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| ||| ||||||||||||||||| |||||||| ||||| |||| Sbjct 3096158 GCTGATACTCTGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 3096099 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 3096098 CCATAAAATCAAAGGGATTTTCTG 3096075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462472750075400