Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq186 89.7 4e-13 seq228 84.2 2e-11 seq14 82.4 6e-11 >seq186 Length=2028101 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 786265 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCT 786206 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | |||||||||||| Sbjct 786205 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 786146 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | ||| || |||| |||||| | || | ||||||| | Sbjct 786145 TGGATCT-TGGCTTTCACATTCTCAATGGTATCACTGGGCTCCATCTCCAGGGTGATGGT 786087 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || || || ||||||||||| Sbjct 786086 CTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTTT 786051 >seq228 Length=1351672 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || |||||||| |||||||||||||| | | || || ||| Sbjct 29170 AAGCACCAAGTGCAGGGTGGATTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGACCATC 29229 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC-CACGGGCACGCCTTCCTTAT 18231 || | ||||||| ||| | || || | || || || || || | ||| ||||| | Sbjct 29230 CTCAAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGACAGG-ATGCCCTCCTTGT 29288 Query 18232 CGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 | |||| | || ||||| | ||| ||||||| |||||| |||| |||||| Sbjct 29289 CTTGGATTT-TAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATA 29347 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTT 18327 | ||||| |||| || || ||||| || ||||||| Sbjct 29348 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTT 29384 >seq14 Length=29593583 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | || || | | || ||||| ||| Sbjct 11200247 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGCCCATTTTCCAGTTGC 11200306 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||| |||| |||||||| ||||| || | ||||||||||| Sbjct 11200307 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 11200356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379312612721805