Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08]
6,789 sequences; 2,026,629,342 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq67 159 3e-34
seq48 123 2e-23
seq57 102 8e-17
>seq67
Length=8586409
Score = 159 bits (176), Expect = 3e-34
Identities = 486/737 (66%), Gaps = 18/737 (2%)
Strand=Plus/Plus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387
||| |||||| | ||||| |||| |||| || | || || || || || | |||| ||
Sbjct 7038769 CACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTCATCCTCCCTTGTA 7038827
Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447
|| | |||| |||||| ||| || | ||| | ||| |||| | || || | |
Sbjct 7038828 GTTAAATATTCTCCATGAAGTCAAGTGCATTTTCTACTCAGAAGGCCTTACTGAAATCCA 7038887
Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507
||| | | ||| || || | |||||| || || | | ||||||| ||| |||
Sbjct 7038888 GCTCCAGCATGAGTCTGTCAGCCATGAATTCAATGCACCGCGTCATTAAAGTACAGCTCA 7038947
Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567
| || || || | | | || | || |||| | ||||||| |||| | || ||||
Sbjct 7038948 TCCCAATGAGCTTCCCTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTAGCCTGACAGCAT 7039007
Query 11568 CAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626
||||||| | | | ||| | || || ||| ||| ||||| |||| |
Sbjct 7039008 TGGTGATTATTTCTTTCACTCACTGC-TTGGAAGGTTTGCGTAGCTGGTGTTTGAACACT 7039066
Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686
| || ||||| | ||| || ||||| | ||||| || || ||||| || || |||||
Sbjct 7039067 AGGCAGGCAAAGTGACAGTGCAAACCCTTATCTCTGCTGATAAGTTCGTTGGAGAATGTG 7039126
Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746
| || ||||||| ||||| ||| || | ||| ||||| ||||| ||||||||||||
Sbjct 7039127 AGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAG 7039186
Query 11747 AATATTCCCTCC-ACAGCTGCAAATGCTACTACTCTTTCTCCATA---TAC--CTTGTTG 11800
|| ||||| ||| || || ||||| || || || ||||||||| | || |||| |
Sbjct 7039187 AAGATTCCTTCCAACTGCGGCAAAAGCCACAACACTTTCTCCACAGGTGACCTCTTGGTC 7039246
Query 11801 CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA 11860
|| | ||||| | |||||| || || ||| | || | || ||| || || |
Sbjct 7039247 CTCG--ATCCAATGCAAGGCCCAGTCTGCCTTCCTCTTGGCACAAGGCATGGTCTCAGTG 7039304
Query 11861 GCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918
|| || ||| ||| | |||| | |||| | | || || || || | | ||
Sbjct 7039305 GCATTGAAAAGAAAATC--CCTTTCCTTGGAATCTTTAATGTAAGTGTCAATGAGGAGAC 7039362
Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978
|||||||||| ||||| || | |||||| | ||||| || | ||||| || || || |
Sbjct 7039363 TATACATTTCAGAATGTATGTGTTCCATGGTAATTTGGAAGCTGTAGAATCAGCGGGCTT 7039422
Query 11979 CTGAACA-CTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037
| || | ||| || || || | ||| | || || |||||||| || |||||
Sbjct 7039423 C-GATGATCTGAACTTCTTGGCTAACGCGCTCCACCAAGTTTTCATTTACTATGCCATCG 7039481
Query 12038 CTAGATGCAAAAAATGC 12054
|| | |||||| || ||
Sbjct 7039482 CTTGCTGCAAAGAAAGC 7039498
>seq48
Length=11824846
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||||| |||| ||| |
Sbjct 3086756 CTTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCT 3086697
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| ||||||||||||||||| || || ||||| ||||| || ||||| ||||| |
Sbjct 3086696 TTAACCAGAATATAGCAGCAAATGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3086637
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 3086636 CCACCACCCTTTCCCC 3086621
>seq57
Length=10025392
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || ||||| ||||| |||||||||
Sbjct 65920 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 65979
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || |||||||||||||| || || || |
Sbjct 65980 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 66039
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 66040 CTGTTTCTTATACCAT 66055
Score = 98.7 bits (108), Expect = 9e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| || |||||||| || ||||| | || |||| | | | |||| ||
Sbjct 63658 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 63717
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| || || |||||||| || || |||||||| ||||||||||| | | || ||
Sbjct 63718 TCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACGGTTT 63777
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
| ||||| || ||||| ||||||||||| | ||| ||
Sbjct 63778 TCTGAGAGATTTCCCATACCGTTTTATAAAGTTGCTT 63814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468485039814160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |