Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq67 159 3e-34 seq48 123 2e-23 seq57 102 8e-17 >seq67 Length=8586409 Score = 159 bits (176), Expect = 3e-34 Identities = 486/737 (66%), Gaps = 18/737 (2%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| |||||| | ||||| |||| |||| || | || || || || || | |||| || Sbjct 7038769 CACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTCATCCTCCCTTGTA 7038827 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 || | |||| |||||| ||| || | ||| | ||| |||| | || || | | Sbjct 7038828 GTTAAATATTCTCCATGAAGTCAAGTGCATTTTCTACTCAGAAGGCCTTACTGAAATCCA 7038887 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 ||| | | ||| || || | |||||| || || | | ||||||| ||| ||| Sbjct 7038888 GCTCCAGCATGAGTCTGTCAGCCATGAATTCAATGCACCGCGTCATTAAAGTACAGCTCA 7038947 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | | | || | || |||| | ||||||| |||| | || |||| Sbjct 7038948 TCCCAATGAGCTTCCCTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTAGCCTGACAGCAT 7039007 Query 11568 CAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 ||||||| | | | ||| | || || ||| ||| ||||| |||| | Sbjct 7039008 TGGTGATTATTTCTTTCACTCACTGC-TTGGAAGGTTTGCGTAGCTGGTGTTTGAACACT 7039066 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||| | ||| || ||||| | ||||| || || ||||| || || ||||| Sbjct 7039067 AGGCAGGCAAAGTGACAGTGCAAACCCTTATCTCTGCTGATAAGTTCGTTGGAGAATGTG 7039126 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | || ||||||| ||||| ||| || | ||| ||||| ||||| |||||||||||| Sbjct 7039127 AGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAG 7039186 Query 11747 AATATTCCCTCC-ACAGCTGCAAATGCTACTACTCTTTCTCCATA---TAC--CTTGTTG 11800 || ||||| ||| || || ||||| || || || ||||||||| | || |||| | Sbjct 7039187 AAGATTCCTTCCAACTGCGGCAAAAGCCACAACACTTTCTCCACAGGTGACCTCTTGGTC 7039246 Query 11801 CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA 11860 || | ||||| | |||||| || || ||| | || | || ||| || || | Sbjct 7039247 CTCG--ATCCAATGCAAGGCCCAGTCTGCCTTCCTCTTGGCACAAGGCATGGTCTCAGTG 7039304 Query 11861 GCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 || || ||| ||| | |||| | |||| | | || || || || | | || Sbjct 7039305 GCATTGAAAAGAAAATC--CCTTTCCTTGGAATCTTTAATGTAAGTGTCAATGAGGAGAC 7039362 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 |||||||||| ||||| || | |||||| | ||||| || | ||||| || || || | Sbjct 7039363 TATACATTTCAGAATGTATGTGTTCCATGGTAATTTGGAAGCTGTAGAATCAGCGGGCTT 7039422 Query 11979 CTGAACA-CTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 | || | ||| || || || | ||| | || || |||||||| || ||||| Sbjct 7039423 C-GATGATCTGAACTTCTTGGCTAACGCGCTCCACCAAGTTTTCATTTACTATGCCATCG 7039481 Query 12038 CTAGATGCAAAAAATGC 12054 || | |||||| || || Sbjct 7039482 CTTGCTGCAAAGAAAGC 7039498 >seq48 Length=11824846 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||||| |||| ||| | Sbjct 3086756 CTTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCT 3086697 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| ||||||||||||||||| || || ||||| ||||| || ||||| ||||| | Sbjct 3086696 TTAACCAGAATATAGCAGCAAATGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3086637 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 3086636 CCACCACCCTTTCCCC 3086621 >seq57 Length=10025392 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || ||||| ||||| ||||||||| Sbjct 65920 ACCTGAAATTCTCCTGACAAGACTCTACGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 65979 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 65980 GACTCATTATTTCCCAGAATCTGAGCAGTGGAAGCAGTAGGCATTGGGGCAATAAGTAAA 66039 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 66040 CTGTTTCTTATACCAT 66055 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| || Sbjct 63658 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 63717 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || |||||||| ||||||||||| | | || || Sbjct 63718 TCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACGGTTT 63777 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| ||||||||||| | ||| || Sbjct 63778 TCTGAGAGATTTCCCATACCGTTTTATAAAGTTGCTT 63814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468485039814160