Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq67 167 2e-36 seq48 105 6e-18 >seq67 Length=8586409 Score = 167 bits (184), Expect = 2e-36 Identities = 488/743 (66%), Gaps = 13/743 (2%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| || | ||||| || ||||| ||||| | | | Sbjct 7038762 TTGACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTCATCCTCC 7038821 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC 12962 ||| || ||||||| ||||| || || | | ||||| || || || | Sbjct 7038822 CTTGTAGTTAAATATTCTCCATGAAGTCAAGTGCATTTTCTACTCAGAAGGCCTTACTGA 7038881 Query 12963 ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC 13022 | | | || || | | ||||||||| | || || ||| || | |||||||| || Sbjct 7038882 AATCCAGCTCCAGCATGAGTCTGTCAGCCATGAATTCAATGCACCGCGTCATTAAAGTAC 7038941 Query 13023 AGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAA 13082 || |||| || || | || | |||| || ||||| | || | | |||| | Sbjct 7038942 AGCTCATCCCAATGAGCTTCCCTGGCAAGGCCTCTGTGAGGAACTCCTGCTCTAGCCTGA 7039001 Query 13083 CTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA-TAGATGCT-- 13139 | || | | | | ||| ||| | | | | || |||| | |||| ||| || | Sbjct 7039002 CAGCATTGGTGATTATTTCTTTCACTCACTGCT----TGGAAGGTTTGCGTAGCTGGTGT 7039057 Query 13140 -TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | |||| | || ||||| | ||||||||| || | |||||| || || || ||||| Sbjct 7039058 TTGAACACTAGGCAGGCAAAGTGACAGTGCAAACCCTTATCTCTGCTGATAAGTTCGTTG 7039117 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 || ||||| || || ||||| || |||| ||| || | ||| ||||| ||||| ||| Sbjct 7039118 GAGAATGTGAGGCCAGGCATCAGTCCTCATTTCTTGAGCCAGAATATCAATGCAAAAGAA 7039177 Query 13259 CCCGaaaaaaaTATTCCTTC-AACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTAC 13316 || ||||| || |||||||| |||||| ||||| || | |||| ||||| ||| | || Sbjct 7039178 CCAGAAAAGAAGATTCCTTCCAACTGCGGCAAAAGCCA-CAACACTTTCTCCACAGGTGA 7039236 Query 13317 TATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 | || ||| ||||| | |||||||| ||| || || | || ||| Sbjct 7039237 CCTCTTGGTCCTCGATCCAATGCAAGGCCCAGTCTGCCTTCCTCTTGGCACAAGGCATGG 7039296 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 | || | || || || | | ||| ||||||| ||| ||| ||||| || || | Sbjct 7039297 TCTCAGTGGCATTGAAAAGAAAATCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAATGA 7039356 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 | ||||||||||| ||||| || | |||||| | |||||||| | || || || | Sbjct 7039357 GGAGACTATACATTTCAGAATGTATGTGTTCCATGGTAATTTGGAAGCTGTAGAATCAGC 7039416 Query 13497 TAGCCTCTGAT-ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATC 13555 || || ||| | ||||||||| | || | || | |||||||| || ||||| Sbjct 7039417 GGGCTTC-GATGATCTGAACTTCTTGGCTAACGCGCTCCACCAAGTTTTCATTTACTATG 7039475 Query 13556 CCGTCACTAGCAGCaaaaaaaGC 13578 || || || || ||||| ||||| Sbjct 7039476 CCATCGCTTGCTGCAAAGAAAGC 7039498 >seq48 Length=11824846 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || ||||| || |||| ||| | Sbjct 3086756 CTTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGTCCAGGCATCAGACCTCTTTTCT 3086697 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 3086696 TTAACCAGAATATAGCAGCAAATGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3086637 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 3086636 CCACCACCCTTTCCCC 3086621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430946740112178