Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq100 140 3e-28 seq22 98.7 9e-16 seq54 93.3 4e-14 >seq100 Length=4670911 Score = 140 bits (154), Expect = 3e-28 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||||||| |||||||||||||| Sbjct 546209 GGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAAGAGGTGATG 546268 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || | || || ||||||||||| |||| ||| ||||||||||| || ||| Sbjct 546269 CCCCAGGCCGAGAGCCAGGGCCCGGACATCAAGGAGCCCGTGAACTCGCTGGGGGAGAAG 546328 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || |||||| | || | ||||| ||||| Sbjct 546329 CTGAAGACGCTGAGGCTGCAGCTGCGGCGCTG 546360 >seq22 Length=20942318 Score = 98.7 bits (108), Expect = 9e-16 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 5319 GTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGA 5378 |||| | || ||| | || || | ||||||||| || || ||||| | || || | Sbjct 6678749 GTTCATAAATGAGCAGTGCAATTCGGTCTCCCTTTTTTACTTCAAATTTTTCTTTGCCAA 6678690 Query 5379 AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCA 5438 | |||||||| || || || | ||| |||| || ||||| || ||||| ||||| || | Sbjct 6678689 AATTAAACAGTACAACACCAAGATTTCCTCTATAATCTTCATCTATAACACCAGCTCCTA 6678630 Query 5439 CGTCGATAAAGTGTT-TG-ACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACC 5496 | || |||||||||| || | | ||| ||||||||||| |||| | ||| ||||| || Sbjct 6678629 CATCTATAAAGTGTTCTGCAGCCCAA--CCGGAACGTGGAGCTACTCTTCCATAGCACCC 6678572 Query 5497 AG 5498 || Sbjct 6678571 AG 6678570 >seq54 Length=10138281 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTT 5374 || ||||| || || ||||| || || ||| ||||| || || ||||| | | || Sbjct 890084 ATCCGTTCACAAATGAGCTGTGCAATTTGGTCACCCTTTTTTACTTCAAATTTTTTTTTG 890143 Query 5375 CCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCG 5434 || || |||||||| || || || | ||| |||| || ||||| || ||||| ||||| Sbjct 890144 CCAAAATTAAACAGTACAACACCAAGATTTCCTCTATAATCTTCATCTATAACACCAGCT 890203 Query 5435 CCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAA 5470 || || || ||||||||||| | || | ||||||| Sbjct 890204 CCTACATCTATAAAGTGTTTTGCAGCCAAGCCGGAA 890239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447712402781680