Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq100 125 8e-24 >seq100 Length=4670911 Score = 125 bits (138), Expect = 8e-24 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || |||||||||||||||||||| || || | Sbjct 546207 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAAGAGGTGA 546266 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || | |||| ||| || ||| |||| ||||||||| ||||| |||| Sbjct 546267 TGCCCCAGGCCGAGAGCCAGGGCCCGGACATCAAGGAGCCCGTGAACTCGCTGGGGGAGA 546326 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || ||||| || ||||| Sbjct 546327 AGCTGAAGACGCTGAGGCT 546345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| ||||| ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 548466 AGCTCCAGGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 548525 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 | || || |||||||| ||||| || Sbjct 548526 TCGAGGCCTACATGACAATGAAGAT 548550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547332748032640