Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq16 376 3e-99 seq39 176 5e-39 seq1 105 8e-18 >seq16 Length=27016236 Score = 376 bits (416), Expect = 3e-99 Identities = 676/984 (69%), Gaps = 9/984 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||||| ||| ||| || ||||| || Sbjct 21606438 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCATGTCAAACTTATTGGC 21606497 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || || || ||||||| || ||| || | || || || || || Sbjct 21606498 AAACAAGTGGTGC---TTGTGCAGTATCCAGTTCAAGTCACCTGCTCCAAAAACACACAC 21606554 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | |||||| ||| |||| || || || | || || || ||||||||||| Sbjct 21606555 GGAGCGCACGTGCACCCCGCTGCAGGGTGGATAGGGTGCGCCCTTGTAAACGTCACCTTC 21606614 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || |||||||| || || || ||||| ||||| ||||||| || | Sbjct 21606615 AAAGTACTGCCATTTGACAAACCTAGCAATTGCTTGCATATCGGACATGTCGTACTTATT 21606674 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | ||| || | || || || | || || | ||| || |||||||| || | || Sbjct 21606675 ACTTAAGGGCACTGAGCCAGGGACTTCAGGGATCCTCTGAAGAGTGGCCCAGAGATACTC 21606734 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||| || | ||| ||||| |||| |||| | | || Sbjct 21606735 GTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGGATTTTTTCATTCTCTAG 21606794 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| || || |||| | || ||||| || || ||||| || || | ||| | Sbjct 21606795 CACGTACTCTACATACTTTCTGCTGACCACAAAATAGGCACTGCCCGAAAACAGGGGTGT 21606854 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | ||| ||| |||||| || || || | || | || | ||| | | Sbjct 21606855 TTCAAGAGGAGGCTGCATTTTGTCAGTCCCCGTATTTGTCAGCTTCCCATCCACGACTAC 21606914 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 | |||| |||||||| | | || || | |||||| | ||||| ||||| |||| Sbjct 21606915 ATAGTGCTTTTTCCACCTTTCTTTTTTATGGGATGGCATTCTCTCCGTTTCTAGGTTGTT 21606974 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 | || || || || || | | |||| || || ||||| || || | ||||| || Sbjct 21606975 TTCTCCCATTAGTGACTTGAGTTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAATC 21607034 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711 | ||||| | |||||||| ||||||||| ||| | | | ||| |||||| ||| Sbjct 21607035 CATGCCGCAAAGGTTTATCAGGTACTTCCAGCCTGCGTTTATTTTGTGGAGGTCCTGCAT 21607094 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 || || | || ||||| || || ||||| || |||||||| ||| |||| || | ||| Sbjct 21607095 ACAGTTGAGGTCGGCCTGGACCCGACTCCACGATGCGTACACCACGGTCTCCAGCTGACT 21607154 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACAT 160828 |||||||||||||||| |||||| || | || || |||| | ||||||||| | || Sbjct 21607155 GGCCACAAAGACGTTACTGAAACAGGATGCAATGCCAGTCACCGCGGCCAGAAAGGA-AT 21607213 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 | || | ||| |||||| || | |||||| | ||||||||| |||||||||||| Sbjct 21607214 C--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCCT 21607271 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || ||||| || || || ||||| | ||| || || || ||||| ||||| Sbjct 21607272 CAGGAGCCTGTCAAACATTTCAATTTTGTGATGAACCACTATGGAATATGCTATTGGAAA 21607331 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 ||| | ||| || | || || | | | ||| || || ||||||| ||| || Sbjct 21607332 CTCTGCCTCTTCTCTGCTAAGAGGTTCTACAATGTATTTGCGTCTCTTGATGAAAGAAGT 21607391 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 |||||| | ||||||||| ||||| Sbjct 21607392 ACAATCACTCGTCATGTTTATATA 21607415 >seq39 Length=13454942 Score = 176 bits (194), Expect = 5e-39 Identities = 229/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 || || | ||| | | |||| |||||||| || || ||||| || |||||||| ||| || Sbjct 4104017 AGGGTGAGGCAGGCTATTCCTGAAATCTTCCCGGAACCGAAGGTATTGAAGAGACACTTG 4103958 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || || ||||| |||| ||||||||||| || |||| |||| ||| | || ||| Sbjct 4103957 TAACACCCCTCGTCGTCCAGAGTGGTATTCCAGAAGGTTATGGTTGTGTTCTGAAGTCCC 4103898 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | || |||||||||| ||| ||||| | | || || || || || || | || | Sbjct 4103897 AGCTCGGTTATGTTCATCTTATCCTTATAGGCCTGCTGGACCACGACCCCATGTTCCTTG 4103838 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||| ||| ||||||| || ||||| | ||||| || |||||||| || || ||||| Sbjct 4103837 CTGAAAGTGACCATGTTGTCTGGGCTTGAAGCCTTGATTTTCTGCCATGTCACAATCAGG 4103778 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | ||| |||| | ||||| | || || || ||||||||| | |||| Sbjct 4103777 ACTTCCTGGGGAATCTCCAGGAAGCATCTTAAAGACGCAGGTGTGTTCAGCGGCTCTCTT 4103718 Query 168453 TCATCTTGAGTTACGAC 168469 |||||||| || || || Sbjct 4103717 TCATCTTGGGTCACCAC 4103701 >seq1 Length=65909399 Score = 105 bits (116), Expect = 8e-18 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| ||| |||| |||||| | ||||| || || | | || | Sbjct 29918141 AGATACTTTGCTAGCTCACTTGGGGAGTTATAATCTTCCACATGAATGAACGAATCTGCT 29918082 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| || || || || | ||| || ||||| | | || Sbjct 29918081 GGAATATAATTTTCATAGTTTTCCCTAGATGGCCCCAGAACAATAGGTACTGAGCCAGCC 29918022 Query 176352 AATAATGAGCG--GTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAG 176409 | | |||| ||||| |||||||| |||||| || |||| ||||||||||| || | Sbjct 29918021 AGAA--GAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCGAAGG 29917964 Query 176410 CTAAATAGAACTTACA 176425 | ||| || ||||| Sbjct 29917963 AAAGATAAAATTTACA 29917948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577170215735640