Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq16 322 6e-83 seq39 156 5e-33 seq9 98.7 1e-15 >seq16 Length=27016236 Score = 322 bits (356), Expect = 6e-83 Identities = 652/961 (68%), Gaps = 15/961 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 21606422 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCA 21606481 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| ||| || | || |||||| || | || || | Sbjct 21606482 TGTCAAACTTATTGGCAAACAAGTGGTGC---TTGTGCAGTATCCAGTTCAAGTCACCTG 21606538 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || || |||||||| ||||||||||| |||||||| || ||||| | || || | Sbjct 21606539 CTCCAAAAACACACACGGAGCGCACGTGCACCCCGCTGCAGGGTGGATAGGGTGCGCCCT 21606598 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 || || || || || |||| ||||| || || ||||||| || || ||||| |||| Sbjct 21606599 TGTAAACGTCACCTTCAAAGTACTGCCATTTGACAAACCTAGCAATTGCTTGCATATCGG 21606658 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||| | | | ||||| | ||||| || | || | ||||| |||| Sbjct 21606659 ACATGTCGTACTTATTACTTAAGGGCACTGAGCCAGGGACTTCAGGGATCCTCTGAAGAG 21606718 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | ||||| || || || || || || | ||||||||| |||| | || Sbjct 21606719 TGGCCCAGAGATACTCGTCCGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGGA 21606778 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||| | ||| || || ||| | || | ||| || || || | Sbjct 21606779 TTTTTTCATTCTCTAGCACGTACTCTACATACTTTCTGCTGACCACAAAATAGGCACTGC 21606838 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| |||| | | |||||| || |||||| ||||| || | | Sbjct 21606839 CCGAAAACAGGGGTGTTTCAAGAGGAGGCTGCATTTTGTCAGTCCCCGTATTTGTCAGCT 21606898 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597 | || || ||||| || | ||| ||||||| | | ||| ||| || || | Sbjct 21606899 TCCCATCCACGACTACATAGTGCTTTTTCCACCTTTCTTTTTTA-TGG--GATGGCATTC 21606955 Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || ||||| |||| ||| | | ||| || | | || || || || | Sbjct 21606956 TCTCCGTTTCTAGGTTGTTTTCTCCCATTAGTGACTTGAGTTTCCTGACAATTTCCAGGT 21607015 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| ||||| || ||||||| || || || | || ||||| || | | Sbjct 21607016 TGGTTTTAATAGGAAAATCCATGCCGCAAAGGTTTATCAGGTACTTCCAGCCTGCGTTTA 21607075 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | || || ||||| | |||||| || ||||||||||| ||||||||||| ||||||| Sbjct 21607076 TTTTGTGGAGGTCCTGCATACAGTTGAGGTCGGCCTGGACCCGACTCCACGATGCGTACA 21607135 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC---CA 162832 | ||| |||||| | | |||| |||||||| || |||||| || | || || || Sbjct 21607136 CCACGGTCTCCAGCTGACTGGCCACAAAGACGTTACTGAAACAGGATGCAATGCCAGTCA 21607195 Query 162833 TCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | ||||||| || | ||| || | ||| | || || || | ||| || | ||||| Sbjct 21607196 CCGCGGCCAGAAAGGA-ATC--CTCTGATTTTTTGTCCACATGAATGCAATAGAAATTCT 21607252 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| ||||||||||||||| | || || ||||| || || || || || ||||| | Sbjct 21607253 GAGGCATGTAGATGGCCCTCAGGAGCCTGTCAAACATTTCAATTTTGTGATGAACCACTA 21607312 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012 | ||||| ||||| || ||||| ||||| || | || |||| || || ||| |||| Sbjct 21607313 TGGAATATGCTATTGGAAACTCTGCCTCTTCTCTGCTAAGAGGTTCTACAATGTATTTGC 21607372 Query 163013 G 163013 | Sbjct 21607373 G 21607373 >seq39 Length=13454942 Score = 156 bits (172), Expect = 5e-33 Identities = 230/323 (71%), Gaps = 2/323 (1%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || || ||||| || || ||||| || | || Sbjct 4104022 CAAAGAGGGTGAGGCAGGCTATTCCTGAAATCTTCCCGGAACCGAAGGTATTGAAGAGAC 4103963 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| || ||||| |||| ||||| ||||| || || | || | || |||| Sbjct 4103962 ACTTGTAACACCCCTCGTCGTCCAGAGTGGTATTCCAGAAGGTTATGGTTGTGTT-CTGA 4103904 Query 171891 -GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGA 171949 |||| || | || ||||||| | ||||| || | ||||||| || || || || Sbjct 4103903 AGTCCCAGCTCGGTTATGTTCATCTTATCCTTATAGGCCTGCTGGACCACGACCCCATGT 4103844 Query 171950 TTCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACT 172009 | || |||||| ||| ||||||| || ||||| | |||||| || |||||||| || || Sbjct 4103843 TCCTTGCTGAAAGTGACCATGTTGTCTGGGCTTGAAGCCTTGATTTTCTGCCATGTCACA 4103784 Query 172010 ATTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAAT 172069 || | ||||| | | | | || ||||||||||||| ||||||||||||| Sbjct 4103783 ATCAGGACTTCCTGGGGAATCTCCAGGAAGCATCTTAAAGACGCAGGTGTGTTCAGCGGC 4103724 Query 172070 TCCCTTTCGTCTTGCGTTACCAC 172092 || ||||| ||||| || ||||| Sbjct 4103723 TCTCTTTCATCTTGGGTCACCAC 4103701 Score = 89.7 bits (98), Expect = 6e-13 Identities = 169/248 (68%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| | || || || | | |||||||||| | || | ||| |||||||||| Sbjct 4106393 ACAGTTTGCCCGAAGTAGGTCATATTCCCCAAGTGCAGCACCTGGCAGATCACCTCCT-- 4106336 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||| ||| | || || ||||| | || || | || | ||||| || ||||| Sbjct 4106335 -TCCCCATCTGATTCTTGGGGTCTTTGATGTGGAGGACACTGATGACAGACGTGGTCCCA 4106277 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| | | | |||||| || || ||||| || || || || ||||| | Sbjct 4106276 TTGGGGTGTGTGATAATCTCAGTACTGTTGTCCATTCCTGACCCAGCGACCTTCCAGGAG 4106217 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || |||| ||||| | ||| | ||||||||||| | |||| |||||| | || Sbjct 4106216 ATTGCAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGACATTTAGGTGGTCTTCGGATAAT 4106157 Query 171743 TCATAGTG 171750 | |||||| Sbjct 4106156 TTATAGTG 4106149 >seq9 Length=33421969 Score = 98.7 bits (108), Expect = 1e-15 Identities = 232/345 (67%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || ||||| ||| | | |||||| Sbjct 31710886 ACCATCTCGGCATTGGTCTTTATAGGAAAGTCTGTTCCGCATGTATTCAGGAAGTATTTC 31710945 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || || |||| || | | || || | | ||||||||| || ||||| || | Sbjct 31710946 CAGGGCAC--TGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCTGCCTGCACCCTGG 31711003 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| || | Sbjct 31711004 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCCAGGAAGACATTTGGGAAGCATG 31711063 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| ||||| || Sbjct 31711064 AAATAATTGCCCTGACTGCCTCTTTGAAAGTGTCTGGG--GACTTCTCATCCACGTGGAC 31711121 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 || |||| ||||||||||| || | || ||||| | ||||| || | || ||||| Sbjct 31711122 ACAATATACGTTCTGAGGGGCATACACAGCTCTCAGCAGCCTCTCAAAGTTTTCAATCTT 31711181 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | ||| ||||| ||||| || || || ||||| || |||||| Sbjct 31711182 CTCGTGGACCACCATAGAGTATGCAATAGGGAAGTCTAACTCCTC 31711226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578382912814400