Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5 167 2e-36 seq17 123 2e-23 seq6 87.8 1e-12 >seq5 Length=37766398 Score = 167 bits (184), Expect = 2e-36 Identities = 134/162 (83%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||| ||| || |||||||| ||||| || | ||||||||||||||| |||||| Sbjct 25977066 AGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 25977125 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || ||||||||||| |||||| |||||| |||||||| || ||||| |||| | Sbjct 25977126 ACACCTAGCCCCATGTCTGCTGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 25977185 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATG 29875 ||||| ||||| || | ||||||||| ||||| ||||||||| Sbjct 25977186 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGGGCCATG 25977227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || || || || | |||||| |||| ||| ||| Sbjct 25979501 AAATGCCTCCACTGAAAGCCATAAACGGGGCCTAAGTCTCCTTCTTTTCTGCTGGAGAAT 25979560 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| |||||| ||||| | ||| ||||||||||||||||| || || ||||| Sbjct 25979561 CCCAGGCTGTCCAGGAAGTCACGGGACCCGTTGGCGTCCCAGATTTTCACTCCCTTAGAC 25979620 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | || ||||| || Sbjct 25979621 GACAGTTCTTTAGCATTCGTGGATCC 25979646 >seq17 Length=24042557 Score = 123 bits (136), Expect = 2e-23 Identities = 175/241 (73%), Gaps = 10/241 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | |||||| | Sbjct 9080812 ATGAGCTCCTTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAACCCTGTCCTT 9080871 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||| ||| |||| |||| ||||||||||| ||||| |||||||| ||||||| || Sbjct 9080872 TAAAGGCCTACTCTTCACGGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 9080931 Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGC 114440 ||| ||||| |||| | |||| ||| | ||||| | | || | || || || || Sbjct 9080932 CTGTTTACCTTCTG-CTGAAGTCGTTGTGGTCATTCTTTGGAAATACTTGAATTCATT-- 9080988 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACA 114498 || | |||| |||| ||||| |||||||| || | |||||||||| ||| ||||| Sbjct 9080989 ----CCTGAGCGGAGGCCAAGGCAGGTCTCCGTTCTTGCGGATGCCCATGTTCTGGGACA 9081044 Query 114499 C 114499 | Sbjct 9081045 C 9081045 >seq6 Length=37047529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | |||||| | | ||| | | |||| ||||| Sbjct 26345686 TTGAGTTCTCTACTGAGAACTAAATTAATCCTGTCCTTTAAAGGCCGACTCTTCTCGGGA 26345745 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 26345746 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 26345793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406129593676054