Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq65 116 3e-21 seq228 107 2e-18 seq186 96.9 3e-15 seq4 82.4 7e-11 >seq65 Length=8612916 Score = 116 bits (128), Expect = 3e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| ||||| ||||| ||| ||| |||||||| || ||||| || Sbjct 6272668 GCCCCCACGCAGACGGGGCACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGA 6272609 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 6272608 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGCGG 6272549 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA---GTGTCGCTCGACTC 41811 | || |||| || | || |||| | || || || | || ||||| || | || Sbjct 6272548 GATGCCCTCCCGGT-CTTGGATTTTAGTTTTGAC-AC-TCTCAGTGGTGTCACTGGGTTC 6272492 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 6272491 GACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6272441 >seq228 Length=1351672 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| ||| || ||||||||||| ||||| ||||| ||||| | || || Sbjct 29173 CACCAAGTGCAGGGTGGATTCTTTCTGAATGTTGTAGTCTGAGAGAGTGCGACCATCCTC 29232 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||| |||| ||| || ||||| ||||| ||||| | | | || |||||||| | | Sbjct 29233 AAGCTGTTTGCTGGCAAAAATCAGACGCTGCTGGTCAGACAGGATGCCCTCCTTGT-CTT 29291 Query 41773 GATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | |||| |||| || | | ||||| || | ||| ||||| | || || || | Sbjct 29292 GGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATAGTCT 29351 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| ||||| || || |||||||| Sbjct 29352 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 29382 >seq186 Length=2028101 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| ||||| ||||| ||||| || || || || Sbjct 786271 AGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGG 786212 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | || | || ||| Sbjct 786211 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 786152 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || |||| | | || || || | ||||| ||||| || Sbjct 786151 TTATCCTGGATCTTGGCTTTCACATTCTCAATGGTATCACTGGGCTCCATCTCCAGGGTG 786092 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| ||||| || ||||| || Sbjct 786091 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATTTT 786051 >seq4 Length=40935223 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 41630 TCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAG 41689 |||| ||| || | ||||| | ||||| ||||| ||| ||| ||||| |||| ||| Sbjct 7265293 TCACAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTCGTAG 7265352 Query 41690 TCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC 41749 || |||| ||| || | || || ||||||||||| || || || || | ||| ||||| Sbjct 7265353 TC--AGAGTGTG-GC-CATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCG 7265408 Query 41750 GCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC 41809 | || | || ||||| || ||| || ||||| | | || || || | Sbjct 7265409 GGAGGGATGCCTTCCTTATCTTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGTGC 7265468 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || |||||| || || || || || ||||| ||||| ||||| || ||||| || Sbjct 7265469 TCAGCCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 7265524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462264767726800