Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1468 408 3e-109 seq2090 172 4e-38 seq1501 123 2e-23 seq1626 82.4 6e-11 >seq1468 Length=8288345 Score = 408 bits (452), Expect = 3e-109 Identities = 436/578 (75%), Gaps = 16/578 (3%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| ||||||||||||||||||||||||| | |||| Sbjct 6925314 AAAACACCTTCACATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAAGGCCTTTC 6925373 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| ||||||||||| |||||||||| | |||||| ||||| | | Sbjct 6925374 TCCTCCTGGACATCAGAAAGAACACCTGGATATTCTGGGAGAAGTTT----TTCTCCAAA 6925429 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 ||| |||||||| ||| || |||| |||||| || |||||||| || |||||||| ||| Sbjct 6925430 TCAGTTTCTGGAAGAAATGTCTCACTTTCAAATTCCTGCATGATACTTGTCACAAATAGT 6925489 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 |||||| || ||| | || | ||||| || || |||||||| ||||| | |||||| Sbjct 6925490 CTAAGATGGCCTGGCTTGTTCCTTGCTTCCTTGTAAACAGAACTGCCTCCCACTATCCAA 6925549 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 |||||||| | |||||||| ||||||||| ||| | ||||| ||| |||||||| ||| Sbjct 6925550 ACCATGTCCATTTTATTTGTTAATTCTGGTTGTGCAGTAAGCGTTAGGGCATCATCCAAA 6925609 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || | | ||||||||||| |||||| | | ||| ||||| | |||||||| | | Sbjct 6925610 CTTTTGGGAAGAAAATGAGCTCCTTGTGGACGTTACTTGAGTTCTCTACTGAGAACTAAA 6925669 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||| ||||| | |||||||| || |||| |||||||| |||||| ||||| ||||| Sbjct 6925670 TTATTTCTGTCCTTTAAAGGTCGAATCTTTTCAGGAATGGAGAACGGGGTCTTCCTACCC 6925729 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGG------ 4428 |||||||| |||||||||||| || || ||||| || || |||||||||||| Sbjct 6925730 ATAATCACCAAATTCTGTTTACCTTCTAATGAAGAGGTTGTGGTCATTCTTTGGAACTAC 6925789 Query 4429 ------AAATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCA 4482 || | || || || ||| | ||| | |||| ||||| || || | ||||| Sbjct 6925790 GAATTCAACTACTTGAATTCGTTCCTGAGTGTGGGCCGAGGCAGGTCGCCCTTCTTGCCC 6925849 Query 4483 ATGCCCATGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520 |||||||| || || | || | |||| ||||||| Sbjct 6925850 ATGCCCATATTCTGGGACTCAACGACAACTTAGTTTAG 6925887 >seq2090 Length=5795150 Score = 172 bits (190), Expect = 4e-38 Identities = 173/223 (78%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 |||||||| || ||||| |||||||| || ||||| ||||||||||| ||| || || Sbjct 578456 ACAATGGGGGTGACGCAGGTGCAGCCCACGGTCACCAGCATCTTCTCCAGCTGGAAGGAG 578515 Query 27012 TTAGGGCAGGGTT--GATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTG 27069 | |||||| | ||| ||| |||||| || || |||||||| ||||| ||||| | Sbjct 578516 TGGGGGCAGTTCTGAGATTCCC--TGCGCAGGACCAGGATCTCTTGCTGGATGGGGACGG 578573 Query 27070 AGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTG 27129 ||||||||||| ||||||| ||||| || || || ||||| || | || ||| ||||| | Sbjct 578574 AGTTCATGTGGAAGTCTACCTTCCCTTCGGCGTTGACACAGCCCAGGTGGCGGCACTTCG 578633 Query 27130 CTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 | ||||| ||||||||||| ||||| || | || || ||||| Sbjct 578634 CCTCCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCGTTGCG 578676 >seq1501 Length=13456237 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||||||||||||||||| Sbjct 1867629 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGCTAATTCTGGT 1867688 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||| ||| |||||||| ||||| || || | ||||||||||| |||||| Sbjct 1867689 TGCTCAAGAAGTGATAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 1867748 Query 4285 AGCTCC 4290 | ||| Sbjct 1867749 GGTTCC 1867754 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | ||||||||||| ||||||||||| Sbjct 1881098 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGCCGATTCTTCTCAGG 1881157 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || |||||||| ||||| ||||||||||||| |||||||| ||| || Sbjct 1881158 GATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 1881206 Score = 114 bits (126), Expect = 9e-21 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 1865323 AAGTTTATATTTTTCAAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 1865382 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||||||| |||||| || ||| | |||| ||||| || Sbjct 1865383 GATCCTTGTCACAAACAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTT 1865433 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||| |||||||||||||||||||||||||| | ||| || || || | || Sbjct 1862088 ATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGATAT 1862147 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||||||||||| ||| ||| Sbjct 1862148 CAGAAAGAACACCTGGGTAT 1862167 >seq1626 Length=1472199 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||| ||||| || || || || || | ||| |||| Sbjct 523364 CTTTGTATTCTGCCCCAAAATGCCTCCATTGAAAGCCGTAAACTGGGCCTAAATCCCCTT 523305 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| || | || || || | || || || || || ||||| |||||||| | Sbjct 523304 CTTCTCTGGCAGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCATCCCAGA 523245 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 523244 TTTTCACTCC 523235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361241659242917