Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1020 134 2e-26 seq1419 114 2e-20 seq3 107 2e-18 >seq1020 Length=3688603 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 989841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 989900 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 989901 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 989960 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 989961 CTGTTTCTTACACCATA 989977 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || |||| || | || ||||| || || || || || || | Sbjct 994683 CATAGGTTTCATATGGGCCATCCTCCTTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 994742 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 994743 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 994802 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 994803 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 994862 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 994863 GTTTATTTGA 994872 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 999548 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 999607 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | |||||||||| | | || || ||||||| Sbjct 999608 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCA 999667 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 999668 AGGCTCCAGGTAAAT 999682 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | ||| || || || || || || || || | Sbjct 1011583 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGA 1011642 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 1011643 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1011702 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 1011703 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 1011748 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/151 (73%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 ||||| ||||| || || |||||||| ||||||||||| | ||||| |||||| |||||| Sbjct 995090 TCTGGGATAGGGTAGTAGTTAATATCAATAATTTTATTCAAGTTTCGGACAATGACTTTG 995149 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAAT 53704 || || || || |||| ||| || ||| | | | |||||||| ||||| Sbjct 995150 GTGACTTCAGCCAACTTCTGAAAGTCATATGTGTGTTCTGATGTGACAAACATATTCAAG 995209 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | || |||| |||||||| || |||| Sbjct 995210 GCCAGGGAAGCCAAGTTACAAACTGCAACCT 995240 >seq1419 Length=2355583 Score = 114 bits (126), Expect = 2e-20 Identities = 385/588 (65%), Gaps = 16/588 (3%) Strand=Plus/Minus Query 24122 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 24181 |||||| || | || || || || ||||||| ||| || |||| | | |||||| || Sbjct 2073753 TTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCCAGTAATTCATT 2073696 Query 24182 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 24241 |||||| |||| |||||| || | || || || | ||| || || | Sbjct 2073695 GGAAAATGTGATCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGCGTGAAAG- 2073637 Query 24242 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC 24301 ||| | ||| ||||| | |||||| ||||| | | | || |||||||||| | Sbjct 2073636 --CAGCAGAGAT--TTCCTCC-ACTGCCCCAAAGCCTACCACTCATTCTCCATAA--GTT 2073584 Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 ||| || | | ||| | | |||| || || |||| | |||||| ||||||| || Sbjct 2073583 GCT-TCTT-TGTCCCCAGTCAGGCCCTGTCAGCTTTCTCT---ACACAAAGCATTGTTTC 2073529 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 |||||||| |||| | || | || || | |||||||| | || |||| | || Sbjct 2073528 AATAGCATTGAAGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAG 2073469 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||| || ||||| |||| | ||| || ||| | |||||| || ||||||| | || Sbjct 2073468 ACTCTATATTTCAGAATATAAGTTGTCCATGTCACCTTGAAAGCCACAGAAACACATTGC 2073409 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || ||||||||||||| | || |||| | | | |||||| | ||| || Sbjct 2073408 TTCTGTAATCTGTACTTTTGGACGAAATTGCGGCACCAGGCTTTCATATCCAGCTCCATC 2073349 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 24601 ||| ||||||| || |||| | | || ||||| | | || | || | || Sbjct 2073348 ACTTGCTGCAACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GG 2073290 Query 24602 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 ||||| | | || || || || ||| || || || |||||||||| || ||||| Sbjct 2073289 CTTCCAGTGCTGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTC 2073230 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || || | ||||| | ||| ||| || |||||| | |||||||| Sbjct 2073229 AGCTTTCTGGTACATCTGCCAAATGCCACGATATTTGAGAGGAAAAAT 2073182 >seq3 Length=5570360 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 3108478 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 3108419 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 3108418 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3108360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 3102242 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 3102183 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 || || || |||| ||| || || ||||||| | || ||| || |||| Sbjct 3102182 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 3102134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593705517566160