Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq831 295 8e-75 seq202 242 4e-59 seq1502 150 2e-31 seq1735 145 9e-30 seq5 129 7e-25 seq1768 114 2e-20 >seq831 Length=3873543 Score = 295 bits (326), Expect = 8e-75 Identities = 268/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||||||||| | | | ||| | ||||| |||||||||||||| Sbjct 671442 AGCAGGGCTTCGATGTCGGGCTCAATATCGATGGTTGGAAAGCGGCGGCTGTACCTGCGC 671501 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| | ||||||| |||||||||||||||||||| || ||||||||| Sbjct 671502 ACAGGCACACCGTCCGGGCCCACCAGAAACTTCTCGAAGTTCCAGGCGACATCGTTGCGG 671561 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || |||||| ||| ||||| | |||||| || Sbjct 671562 CACACTGGAGACCAGGTGATGAACTTAGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 671621 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||| ||||| || ||||||||||||||||| || ||| ||||| || ||| Sbjct 671622 GGGGCAGGCAGAGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCCTGCGCACCATTCACC 671681 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| ||||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 671682 TCGCACTTCTCAAAGAGTGTGAAGTTGGGCTCGAACCCGCCGCCAGGTCGGACGTACTTG 671741 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| || |||||| | |||| |||||| ||||| Sbjct 671742 AGGGAATTCAGGATCTCTTCGTTCTTGGCGTTCTCCTG 671779 Score = 203 bits (224), Expect = 4e-47 Identities = 195/250 (78%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| ||||| || || | || |||| Sbjct 672052 CCTGATGCCCGAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCGCGGGGCCCAAGGC 672111 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||||| Sbjct 672112 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCTA 672171 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| ||| || | | |||| | ||||| || || || |||| Sbjct 672172 CATTCTCAATGAGCAGCACCTTGCCACGCAGGGAGCCCAGGCTCAAGGGCTCCCCGCCGG 672231 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | |||||| || |||||||||||||| || | | || || |||||||| || | Sbjct 672232 CCAGCGGGCGCGCAGAGAAGGCGTACACCGAGCGCCGGGCGGCAGCCGCAAGCTGAGCAG 672291 Query 83631 CGTACTTGGC 83640 || || |||| Sbjct 672292 CGCACATGGC 672301 >seq202 Length=4906740 Score = 242 bits (268), Expect = 4e-59 Identities = 364/511 (71%), Gaps = 31/511 (6%) Strand=Plus/Plus Query 83105 CTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCC 83164 || ||||||||||||||| ||||| ||||||| ||||||||||||||||||||| Sbjct 497763 CTCTACCTGCGCACGGGCACACCGTCCAGGCCCACCAGGAACTTCTCGAAGTTCCAGGCG 497822 Query 83165 ACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGC-TGGGGGTCGCTCACGAGCGTGCT 83223 ||||||| |||| |||| |||||||||| |||| | |||||||| ||||||||| | | Sbjct 497823 ACGTCGTCGCGGTACACGGGAGACCAGGTGATGAACGCGGGGGTCGGTCACGAGCGCGGT 497882 Query 83224 CATGTCGTCGCTAGG-CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 ||| || | || ||| ||||| ||||| || |||| |||||||||| | || ||| Sbjct 497883 GGCGTCTTCACGGGGTCGCGGGCAGAGCCTCCCGCAGGAGGGCGAAGAGCCGGTGCGCCT 497942 Query 83283 TTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAG 83342 || ||||| |||||| |||||| ||| | | ||||| | || ||| ||| || | Sbjct 497943 GCGCGCCGTTCTCCTCGCGCTTCTCCAAGTGAGTGAAGTTGGCCTGGAACCCGCCGCCGG 498002 Query 83343 GACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGC----------------- 83385 | |||| || || |||||| || ||||| | | || ||| Sbjct 498003 GTCGGAAGTACTGGAGGGAATTCAGGATCTTTTCGTGCTTGGCCGGATGCCAAGACCAGG 498062 Query 83386 --GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCT 83443 ||| ||||| | | ||||||||| ||| |||| || ||||| ||||| ||| | || Sbjct 498063 ATGTTCTCCTGAGGCCGGAACTGGTTGCAC-GGAAGCCGAGCACGACCAGGCCCTG-GC- 498119 Query 83444 CCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGG 83503 || ||||||||||||||| ||||| ||| ||||| || ||||||| | ||||| || Sbjct 498120 CCGAGGCGCCGCTGCAGCCGGTTCACCTGGGTGTAGCCCTGGACCGTTGTGCCTCAAAGC 498179 Query 83504 GACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCT 83563 || || ||||| ||| |||| ||| | |||| || |||| | |||| | || | Sbjct 498180 GATGCCACGTTGTCG-CCAGCAGCACCTTGTCCCG-CAGGAGCCCAGGCTCCCGGGCCCC 498237 Query 83564 CCTCCGGTAATCGGGCGTGCTGAGAAGGCGT 83594 | |||| ||||| ||| | |||||||| Sbjct 498238 GCGCCGG----CGGGC-TGCAGCGAAGGCGT 498263 >seq1502 Length=8123777 Score = 150 bits (166), Expect = 2e-31 Identities = 231/325 (71%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||| | || ||||||||||| | | | |||| | |||||| ||||||| ||||| Sbjct 661118 AGCAGGACTTCCCCGTCGGGCTCCATGTCGAAGGTCAGACAGCGGCGGCTGTATGTGCGC 661177 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| | ||| | ||||| | ||||||||||||||||| | || | ||||| Sbjct 661178 ACAGGCACACAGTCCGGGCCCACTAGGAACTTCTCGAAGTTCCCGATGTTGTTGATGCGG 661237 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||| ||||| | |||| || ||||||| ||| ||||| ||| || | | Sbjct 661238 CACACTGGTGACCAAGTGATGAACTTGGGGTCGGTCATGAGCGCAGCGGCGTCATCACCA 661297 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||| | ||||| | ||||||||||||||| | |||| | || || || ||| Sbjct 661298 -GCACGGGCTGAGCCTCCTGCAGGAAGGCGAAGAGCTG-TGTG-CAGCGCGCCATTCACC 661354 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | | | ||| |||||| | || || |||| ||| ||| || || ||||||| ||| Sbjct 661355 TTGAA---CTCAAAGAGCGTGAAATTGGGCTTGAACCCGCCTCCGGGTCGGACGTACTTG 661411 Query 83357 AGGGAAGGCAAGATCTCGGCATTCT 83381 ||| || | |||||| | |||| Sbjct 661412 AGGCAATTTAGGATCTCTTCGTTCT 661436 >seq1735 Length=7208636 Score = 145 bits (160), Expect = 9e-30 Identities = 317/476 (67%), Gaps = 34/476 (7%) Strand=Plus/Minus Query 83097 AGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGT 83156 ||| | ||||| |||||||||| ||| || || | | ||||| |||||||||||||| Sbjct 5307310 AGCAGCGGCTGCACCTGCGCACAGGCACACCATCTGGGCTCACCAGGAACTTCTCGAAGT 5307251 Query 83157 TCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGA 83216 | ||||| || | |||| ||||||||||||||| | |||| || ||||||| ||| | Sbjct 5307250 TTCAGGCGACACCTTTGCAGCACACTGGAGACCACGTGATGAACTTGGGGTCGGTCAGCA 5307191 Query 83217 GCGTGCTCA--TGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGG 83274 |||| | || ||| || || || |||||| Sbjct 5307190 --GTGCAGAGTCGTTGTCACTGGGTGCAGGCAGG-------------------------- 5307159 Query 83275 ATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCC 83334 || ||| || || | ||| ||| ||||| |||||| | ||| ||| ||| || Sbjct 5307158 -TGCGCCTGCGCGCCACTCCCCTTGCAGTTCTCAAAGAGCTTGTTGTTGGGCAAGAACCC 5307100 Query 83335 GTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | || ||||| |||| ||| || || |||||| | |||| |||||| | | | Sbjct 5307099 GCCGCCTACTGGGACGAGCTTGAGGAAATTCAGGATCTCTTCGTTCTTGGCGTTCTGCGG 5307040 Query 83395 GTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCG 83454 || |||||| || | | | ||| |||||||| ||||| ||||| | || |||| | | Sbjct 5307039 ATGCCCGAACGGGGTGCGCTAGAAGCCAAGCACCACCAGGCCCCGGGAGCCGAGGCACTG 5306980 Query 83455 CTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCG-TGCTACCTCAGAGGGACGCTACGT 83513 | | ||| | |||| || ||| | | || ||| | |||| |||||||| | |||| || Sbjct 5306979 CAGGAGCCCATTCACTTGGGTGGAGTTCCAGACGGTTGCT-CCTCAGAGCTAGGCTA-GT 5306922 Query 83514 TCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCG 83569 |||| |||||| ||| | || | | |||| |||||| |||| || || ||| Sbjct 5306921 TCTCAGTGAGCAGCACCTCATCTCGCAGGGAGCCCAAGCTCGCAGGCTCCCCGCCG 5306866 >seq5 Length=281936 Score = 129 bits (142), Expect = 7e-25 Identities = 239/342 (70%), Gaps = 9/342 (3%) Strand=Plus/Minus Query 83136 CCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAA 83195 |||||| ||| ||||| ||||||||||| | | | |||| ||||||| ||| ||||| | Sbjct 23770 CCACCAGGAAGTTCTCAAAGTTCCAGGCAAAGCCATTGCAGCACACTAGAGGCCAGGTGA 23711 Query 83196 TGAGCTGGGGGTCGCTCACGAGC---GTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCT 83252 |||||| |||||| ||| |||| ||| ||| || || | ||| || || |||| Sbjct 23710 TGAGCTTGGGGTCAATCAAGAGCTCAGTG-GCAT-TC-TCCGTGGGCATAGGTAGAGCCT 23654 Query 83253 CTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTC-GAAG 83311 | | ||| || | || ||| | | ||| | | || ||||| |||| ||| |||| Sbjct 23653 CCCACAGGGAGACAAAAAGCAGGTATGCTTGGGTGTCATTCACCTCACACTGCTCAGAAG 23594 Query 83312 AGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATC 83371 || | ||||| ||||| || || | ||||| ||| || ||| || ||| || ||| Sbjct 23593 AGAGTGAAGTTGGGCTCAAATCCTCTGCCAGGTTGGATGTACTTGAGAGAATTCAGGATT 23534 Query 83372 TCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACC 83431 || |||| ||| || ||||| || | ||||||||| || || || | || || ||| Sbjct 23533 TCTTAGTTCTTGGCATTCTCCTGATGCCTGAACTGGTTGCATGGAAAGCAGAGTACAACC 23474 Query 83432 AGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTC-GTTCATCTG 83472 | ||| | | || |||| | ||| ||||| |||||| || Sbjct 23473 TGGCCCTGTG-GCCCAGGCACTGCTAGAGCTCAGTTCATTTG 23433 >seq1768 Length=7118035 Score = 114 bits (126), Expect = 2e-20 Identities = 202/287 (70%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 1021704 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 1021646 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 1021645 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 1021586 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| ||| || |||||| ||| | | |||| ||||| Sbjct 1021585 GCGGCTCCCTGGGCAAGAAGCAA-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 1021527 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| || || |||| | |||| ||| Sbjct 1021526 GTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGTGTCTGGACCCTGGAGTTTGTGGGC 1021467 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||| | | |||||| || |||||| Sbjct 1021466 AAACTGGACGAGCGCTGCCGGCGCAG--GGACACGGAGCAGAGGCGC 1021422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608780309216680