Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1408 86.0 5e-12 >seq1408 Length=2444343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||||| | ||| | ||||| || |||||||| ||| |||||| Sbjct 1486652 AAGATGCAGATTTTCATGACAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCC 1486593 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 || || | | || | ||| || || |||| ||||| | || ||| Sbjct 1486592 TAGGATACAATAGAAAATATAAAGGCCAAGATCCAGGATAGGGAAGGAATTCCTCCTGAT 1486533 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| | || || | || ||| Sbjct 1486532 CAGCAAAGACTGATCTTTGCTGGCAAGCAAATGGAAGATGGACATGCTTTGTCTGACTAC 1486473 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || | |||||||||||| |||||||| | ||||| Sbjct 1486472 AACAATCAAAAGGAATCCACTCTTCATCTTGTGTT 1486438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410785950728138