Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1564 84.2 4e-11 >seq1564 Length=1685133 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 52053 TCAGGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTA 52112 ||| || ||||| ||||| ||| | ||||| | |||||||| ||||||||| | || || Sbjct 1485972 TCAAGCTTTTTTCGGAGCCCAGATGAATTCCCTCATCCATGTGATTATGTACTCGTACTA 1486031 Query 52113 TGGTATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTT 52170 || | || | ||| || ||| ||||||| |||||| ||||||||||| || || Sbjct 1486032 CGGCTTAAGTGCATTTGGCCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTG 1486089 Query 52171 ACTATAATGCAGTTGGT 52187 ||||| ||||| |||| Sbjct 1486090 ACTATGTTGCAGCTGGT 1486106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923171792906680