Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1408 84.2 3e-11 >seq1408 Length=2444343 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| ||||| ||| ||| | || || || || Sbjct 1486423 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGAT-TGTTGTAGTCAGA 1486481 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 1486482 CAAAGCATGTCCATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1486541 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| |||| || Sbjct 1486542 AATTCCTTCCCTATCCTG 1486559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743506259728640