Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq147 1764 0.0 seq2012 120 2e-22 seq91 86.0 4e-12 >seq147 Length=5126765 Score = 1764 bits (1956), Expect = 0.0 Identities = 1378/1648 (84%), Gaps = 41/1648 (2%) Strand=Plus/Minus Query 107140 TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCAC 107199 || |||||||| ||||||||||||| | |||||| |||| || || ||| ||||||| Sbjct 4484479 TCCTAGGCAGGTCTTGACTGAGGATTTGTGTCTAAAGAA---ATAGATTTTTGCCATCAC 4484423 Query 107200 TCTGGAGTTGAACTTGATGTTCT--------------GGATTAGTTTGTAATTAAAGGCA 107245 | |||||||||||||||||||| || ||||||||||| | |||||| Sbjct 4484422 TTTGGAGTTGAACTTGATGTTCCTATGAGCGTGTTCAGGGTTAGTTTGTAACTGAAGGCA 4484363 Query 107246 TTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCTGATCTC 107305 ||||||||||||||||||| ||||||||| |||| | |||||| |||| || | ||| Sbjct 4484362 TTTTGTTCTGTCCAAGGAT-TCCTCCTCCTCCTTCCGTGTGCCTAAACCCTGCCAGTCTG 4484304 Query 107306 CCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGC 107365 | || ||||||||||| | |||||||||||| || | |||| | | ||||| ||| Sbjct 4484303 CTATGCCATGAAGATGCTTCGGTGGAAGAAGACACTCTTCCGGCAGCGTTGTCTGTTGGC 4484244 Query 107366 CCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATG 107425 ||||||||||||||||||||||||| ||||| |||||||| |||| ||||| || ||||| Sbjct 4484243 CCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTGAGATTTTCTCTCAGATTGAAATG 4484184 Query 107426 TGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACAT 107485 ||| | ||||| ||| |||||||||||||||||| ||||| |||| |||| |||| || Sbjct 4484183 TGACTTTAATTCCCTGGGTCTGGAGTCCAGGGACTTTCAGAGCCAGCGCTGTCGGGATAT 4484124 Query 107486 GTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCG 107545 |||||||| ||||||||||||||||| |||| ||||||||||||||||||||| || Sbjct 4484123 CTTGTACAAGGCCCTGAAGCTGCCAGCAAGGAGACCCATCAACTGTTCTGGGATCATCCG 4484064 Query 107546 AGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCG 107605 ||||||| |||| ||| |||| ||||| ||||| ||||| |||||| ||||| Sbjct 4484063 TGGGGACCGCACAGCATTGGGAGAGGCTCTCCTGGACAAGCTGGACACGAAGAAGAAGCG 4484004 Query 107606 GTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGC 107665 | |||| |||| | |||| | ||||||||||| |||||||| ||||| | ||| ||||| Sbjct 4484003 GGAGCCTTTCACAGACACCGACTACCTCAACATGACCAGAGATTGTGAACACTTTAAGGC 4483944 Query 107666 CCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTA 107725 | |||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||| || Sbjct 4483943 CGAAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTTAGATTTCCCTATTGCATA 4483884 Query 107726 CTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGC 107785 ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 4483883 CTCTATGGTGGTCCATGAGAAGATTGAAAACTTTGAAAGGCTGCTGCGAGCTGTGTATGC 4483824 Query 107786 CCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGC 107845 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| Sbjct 4483823 CCCTCAGAACATATACTGTATCCACGTGGATGAGAAGTCCCCAGAGACTTTCAAGGAGGC 4483764 Query 107846 GGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGT 107905 ||||| || |||||||| |||||||| ||||| ||| |||||||||||||||| | ||| Sbjct 4483763 AGTCAAAGCAATTATTTCATGCTTCCCTAATGTATTCTTGGCCAGTAAGTTGGTTCGGGT 4483704 Query 107906 GGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA 107965 ||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||| Sbjct 4483703 GGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACTTGAACTGCATGGAAGACTTGCTCCG 4483644 Query 107966 GAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGAC 108025 |||||||||||||||||| ||||| || |||||||||||||||||||| || |||||||| Sbjct 4483643 GAGCTCAGTGCCATGGAAATACTTCCTAAATACATGCGGGACAGACTTTCCTATAAAGAC 4483584 Query 108026 CAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA 108085 |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 4483583 CAATGCTGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGGAGTCAGA 4483524 Query 108086 GGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACT 108145 | ||||| |||||| ||||||| |||||||||||| | |||||| |||||||||||||| Sbjct 4483523 GATACCTACTGAGTACAAAAAATCTCGCTGGAAATATCACTATGAAGTGACAGACACACT 4483464 Query 108146 GTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAA 108205 | || ||||||| |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 4483463 GCACAGAACCAGCAGAATGAAGGACCCTCCTCCTGACAATTTACCTATGTTCACAGGTAA 4483404 Query 108206 TGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCA 108265 ||||||| ||||||| |||||| |||| | ||||||||||||| ||||| ||||| | Sbjct 4483403 TGCCTATATTGTGGCTTCTCGAAGCTTTATTGAACATGTCTTAGAGAACCCCAAATCACG 4483344 Query 108266 AAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT 108325 | ||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 4483343 ACAGCTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAACACCTCTGGGCCACCCT 4483284 Query 108326 TCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGA 108385 ||||||||| || |||||||||||||||||||| |||||||||| |||||||||||| Sbjct 4483283 TCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTATCACCCCAAGTTTCACATCTCAGA 4483224 Query 108386 CATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445 |||||||||||| |||||||| |||||||||||| ||| |||||| | |||| ||||| Sbjct 4483223 CATGACTGCCATTGCCAGGCTGGTCAAGTGGCAGGGCCATGAGGGAAACATCAGTATGGG 4483164 Query 108446 GGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGG 108505 ||| ||||||| ||| |||||||||||||| | | |||| ||||| ||||| || | || Sbjct 4483163 GGCACCTTATGAACCTTGCTCTGGAATCCACCAGCGGGCTATCTGTATTTATGGAACTGG 4483104 Query 108506 GGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGT 108565 |||||| |||||||| |||||||||||||| ||||| |||||||||||||| | ||| Sbjct 4483103 AGACCTGCCTTGGATTCTTCAGAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGT 4483044 Query 108566 GGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGAC 108625 ||||||||| || || |||||||||||||||||| ||||| ||||||| |||||||||| Sbjct 4483043 GGATGATAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGGCTGTCTATGGGAC 4482984 Query 108626 TGAACTTTGAGCTGCACTGTG---------------------GGCCAGGGAC-TGTGCCA 108663 |||||| |||| | | ||||| || |||| || ||||| | Sbjct 4482983 TGAACTCTGAGATACCCTGTGAGAGAATTGCTACCTGGGTGAGGGCAGGAACATGTGCAA 4482924 Query 108664 ACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGG 108723 |||||||||| || | || || |||| ||||||| || |||||| |||||||||||| Sbjct 4482923 ACATGCCCAGAATGTGCCGGGACAGTGT-GGGTGGGAGATCAGGGCTCTGGAATCCATGG 4482865 Query 108724 CATCCCCCAGGGTCAGAGGGCTGCTTTG 108751 | ||||||||||| || |||||||| || Sbjct 4482864 CGTCCCCCAGGGTAAGTGGGCTGCTCTG 4482837 >seq2012 Length=6040582 Score = 120 bits (132), Expect = 2e-22 Identities = 570/889 (64%), Gaps = 29/889 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || || || ||| | || Sbjct 2130377 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTCGTTCATCACAAA 2130436 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | || || ||||| | || || | Sbjct 2130437 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCACAGAATTTCTATTGCATT 2130496 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | |||||| | | ||| ||||| Sbjct 2130497 CATGTGGACAGAAAATCAGAGGATTCCTTTTTGGCGGCGGTGATTGGCATCGCATCCTGT 2130556 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| |||||||| || ||| ||||| || ||||| ||| | Sbjct 2130557 TTCAGTAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTGTACGCCTCATGGAGTCGC 2130616 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| | | |||| | ||||| ||||||| Sbjct 2130617 GTTCAGGCTGACCTCAACTGCATGCAGGACCTT-TACAGAA-TGAGTGCAGACTGGAAGT 2130674 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 2130675 ACTTGATCAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 2130734 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| ||| | ||| | |||| | || ||||| | || || | | Sbjct 2130735 AGCTCAAGTCGTTAATGGGAGAAAACAACCTAGAAACTGAGAGAATGCCATCCAAT---A 2130791 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AG--GTGACAGACACACTGTACCCTACCAGCA 108159 ||||| | | |||||| | | |||| || || | | | ||| || ||| Sbjct 2130792 AAAAAGAAAGGTGGAAAAAGCATTATGCAGTCGTAAATGGAAAGCTG-ACAAACACAGGG 2130850 Query 108160 A--GATGAAGG--ACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 | || ||| ||||||| | ||| | || |||| |||| | |||||||||| Sbjct 2130851 ACTGACAAAGTGCACCCTCCTCTTGAAACG---CCTCTGTTTTCAGGCAGTGCCTATTTT 2130907 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275 |||| | | | | | ||| | | || |||| || ||| ||| | | | Sbjct 2130908 GTGGTCAGTAGGGAGTATGTGGAGTACGTTCTAGAGAATGAAAAAATCCAGAAGTTTATG 2130967 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||||||||| || ||||| || || | ||||||||||| |||||||| | | Sbjct 2130968 GAGTGGGCCAAAGACACATACAGCCCGGATGAGTATCTCTGGGCCACTCTTCAGCG-GAT 2131026 Query 108336 CCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || || | | || ||||| | |||| ||||| |||||| |||| || |||||| Sbjct 2131027 CCCTGAAGTCCCAGGCTCGCTGTCCTTAAGCCA---TAAGTATGACATGTCCGACATGCA 2131083 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| || || || | ||||||||||||||| || || || | || ||| || || Sbjct 2131084 TGCGATTGCTAGATTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGTGCCCC 2131143 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || |||||||| || |||| | | | | ||| | | || || || ||| | Sbjct 2131144 CTACCCACCCTGCAGCGGGGTCCACGTGCGTTCTGTGTGCGTCTTTGGAGCAGGTGACTT 2131203 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 | ||||||| || | | || ||| | || || || ||||||||| || Sbjct 2131204 GAACTGGATGCTGCGCATGCACCACTTGTTTGCCAATAAGTTTGACACG 2131252 >seq91 Length=5225710 Score = 86.0 bits (94), Expect = 4e-12 Identities = 228/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 107696 TAAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 ||||||||| ||| || || || | || || | ||||| ||||| | || | || | Sbjct 1217658 TAAAGAAGAAGCT-GAATTTCCTTTGGCGTATACAATGGTCATCCATCACAATTTCGATA 1217600 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 ||||| | |||| | |||| | || |||||||| | |||||||| || |||| Sbjct 1217599 CCTTTGCAAGGCTCTTCAGAGCTATTTACATGCCTCAGAATGTCTACTGTGTTCATGTGG 1217540 Query 107815 ATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTCCC 107872 ||| ||| | ||| || ||| ||||| ||||| || | |||| | ||||||||| Sbjct 1217539 ATGAAAAGGCGACAGTCGAATTT-AAAGATGCGGTGCAG-CAATTACTGAGCTGCTTCCC 1217482 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 ||||| ||| ||||| ||| ||| || || || || | | ||||| | || Sbjct 1217481 CAATGCTTTCCTGGCCTCCAAGATGGAGCCAGTTGTGTACGGCGGGATTTCCAGGCTCCA 1217422 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTT 107989 || ||||||||||| || ||||| ||| | ||| ||||||||||| ||| Sbjct 1217421 GGCGGACCTGAACTGCATCAAAGAC---CTCGCGGCCTCGGAGGTGCCATGGAAATACGC 1217365 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || ||| || |||||| | || ||||| Sbjct 1217364 CATCAACACCTGTGGGCAGGATTTCCCCCTGAAAACCAA 1217326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348259602112158