Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1020 131 2e-25 seq1723 114 2e-20 seq599 104 3e-17 seq3 102 1e-16 >seq1020 Length=3688603 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 989841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 989900 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 989901 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 989960 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 989961 CTGTTTCTTACACCATA 989977 Score = 104 bits (114), Expect = 3e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || |||| || | || | ||| || || || || || || | Sbjct 994683 CATAGGTTTCATATGGGCCATCCTCCTTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 994742 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||| | |||||| || || || || || || ||||| |||| Sbjct 994743 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 994802 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 994803 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 994862 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 994863 GTTTATTTGA 994872 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 999548 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 999607 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | |||||||||| | | || || ||||||| Sbjct 999608 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCA 999667 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 999668 AGGCTCCAGGTAAATAGC 999685 >seq1723 Length=12986255 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 6655881 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCT 6655940 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| |||||||| || || || || ||||| ||||||||||| ||||| ||||||| Sbjct 6655941 TGAGCCAGAATATGGATGCAAAAGAGCCAGAAAAAAAGATTCCTTCCACTGCGGCAAAGG 6656000 Query 33724 C 33724 | Sbjct 6656001 C 6656001 >seq599 Length=4219546 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| ||| | ||||||||| | ||||||| || || ||| Sbjct 908626 GTTACTTTCTATGATGTATATATTGTTCTGCAAGCTTTCGTACTGACTACCGCGGTATTT 908567 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 |||| | ||||| || ||||||||||| |||||||||||||| ||| ||| Sbjct 908566 CTTGGTTTGACTGTATACACTCTACAATCTAAGAGAGATTTCAGCAAATTTG 908515 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 925586 TGCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCGGCCAGCGTGCAC 925527 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 925526 ATCCGCATGG 925517 >seq3 Length=5570360 Score = 102 bits (112), Expect = 1e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || || ||||| |||||| Sbjct 3102242 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 3102183 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || |||| ||| || || ||||||| | || ||| || |||| Sbjct 3102182 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 3102134 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 3108478 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 3108419 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 3108418 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3108360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800539815760