Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq599 163 4e-35 seq1020 134 2e-26 seq1419 107 3e-18 seq3 107 3e-18 >seq599 Length=4219546 Score = 163 bits (180), Expect = 4e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||| ||| |||||||||||||||||| Sbjct 902102 TTTTTATTAACTGCTTCCAAAAACCGCAACAGGTGCAGGAATAGATTGATGATATCCAAG 902161 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| | || | || || ||||| || || || || ||| ||| || || ||||| Sbjct 902162 TAGAGGTCAATGGCAGCAAATACATACTCCTCGGGTGACAGCCGATGCATCAGCGAGTGT 902221 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 |||||||||| ||||||||| ||||| | ||||||||| | ||||| | ||||| |||| Sbjct 902222 GTGTCATAGACAATGAATCCACAGAAAAGAAGGGCCCCTACAGCAGCGATGACCAACTCC 902281 Query 9411 ACTGTTTCACTTTGCACAAA 9430 ||||| ||||| || | ||| Sbjct 902282 ACTGTCTCACTGTGAAAAAA 902301 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || || |||| ||| |||||||||||||| ||||||||||| ||| |||||| | ||||| Sbjct 908508 CCCGCACCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTGTATACAGTCAAACCAAGA 908567 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || || |||||||| | ||||||||||| ||| | || ||||||||||||||||| Sbjct 908568 AATACCGCGGTAGTCAGTACGAAAGCTTGCAGAACAATATATACATCATAGAAAGTAAC 908626 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 925517 CCATGCGGATGTGCACGCTGGCCGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 925576 Query 9907 TGGAGGAGCACGCGTAG 9923 |||||||||| | |||| Sbjct 925577 TGGAGGAGCAGGGGTAG 925593 >seq1020 Length=3688603 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 989841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 989900 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 989901 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 989960 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 989961 CTGTTTCTTACACCATA 989977 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || |||| || | || ||||| || || || || || || | Sbjct 994683 CATAGGTTTCATATGGGCCATCCTCCTTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 994742 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 994743 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 994802 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 994803 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 994862 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 994863 GTTTATTTGA 994872 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 999548 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 999607 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | |||||||||| | | || || ||||||| Sbjct 999608 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCA 999667 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 999668 AGGCTCCAGGTAAATAGC 999685 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | ||| || || || || || || || | | Sbjct 1011583 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGA 1011642 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1011643 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1011702 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 1011703 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 1011748 >seq1419 Length=2355583 Score = 107 bits (118), Expect = 3e-18 Identities = 244/366 (67%), Gaps = 1/366 (0%) Strand=Plus/Minus Query 36367 TACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 36426 ||||||| ||||||| || |||||||| |||| | || | || || | |||||||| Sbjct 2073546 TACACAAAGCATTGTTTCAATAGCATTGAAGACAAAGGCCTCCTCTTTGCAATCTTTAAT 2073487 Query 36427 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 36486 | || |||| | ||||| || ||||| |||| | ||| || ||| | |||||| Sbjct 2073486 GCAAGTGTCAACAAGGAGACTCTATATTTCAGAATATAAGTTGTCCATGTCACCTTGAAA 2073427 Query 36487 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 36546 || ||||||| | || || ||||||||||||| || || |||| | | | | Sbjct 2073426 GCCACAGAAACACATTGCTTCTGTAATCTGTACTTTTGGACGAAATTGCGGCACCAGGCT 2073367 Query 36547 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 36606 ||||| | ||| ||||| ||||||| || |||| | | || ||||| | | Sbjct 2073366 TTCATATCCAGCTCCATCACTTGCTGCAACGAAAGCCAGAGCCCGAGATACAAAATCTCT 2073307 Query 36607 TTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 36666 || || | || ||||| | | || || || || ||| || || || | Sbjct 2073306 CTCCACAGGCTTCAG-GGCTTCCAGTGCTGAATGTCCTTGGAGTGATCTACCTCCTCAGC 2073248 Query 36667 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 36726 ||||||||| || ||||| || || | ||||| | ||| ||| || |||||| | || Sbjct 2073247 TGTCCAAAAGGAAGCCTCAGCTTTCTGGTACATCTGCCAAATGCCACGATATTTGAGAGG 2073188 Query 36727 AAAAAT 36732 |||||| Sbjct 2073187 AAAAAT 2073182 >seq3 Length=5570360 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 3108478 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 3108419 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 3108418 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3108360 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 3102242 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 3102183 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 36650 || || || | || ||| || || ||||||| | || ||| || |||| Sbjct 3102182 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 3102134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658154971744280