Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1435 89.7 3e-13 >seq1435 Length=8499281 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||||||||| | || | ||||| |||| ||||||||||| || || ||||||||||| Sbjct 996998 ACCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 996939 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| || ||| || | | |||||||| | ||| Sbjct 996938 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 996879 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||| || || || | | | ||| || || | | ||| |||||| |||| | Sbjct 996878 GATGCCCTCCTTATCCTGGATCTTGGCC---TTGACGTTCTCAATGGTGTCGCTGGGCTC 996822 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || || || || || || || ||||| || ||||| || Sbjct 996821 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 996768 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||||||||| | || | ||||| |||| ||||||||||| || || ||||||||||| Sbjct 997226 ACCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 997167 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| || ||| || | | |||||||| | ||| Sbjct 997166 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 997107 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||| || || || | | | ||| || || | | || |||||| |||| | Sbjct 997106 GATGCCCTCCTTATCCTGGATCTTGGCC---TTCACATTCTCGATGGTGTCGCTGGGCTC 997050 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || || || || ||||| || ||||| Sbjct 997049 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 996999 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||||||||| | || | ||||| |||| ||||||||||| || || ||||||||||| Sbjct 997454 ACCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 997395 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| || ||| || | | |||||||| | ||| Sbjct 997394 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 997335 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||| || || || | | | ||| || || | | || |||||| |||| | Sbjct 997334 GATGCCCTCCTTATCCTGGATCTTGGCC---TTCACATTCTCGATGGTGTCGCTGGGCTC 997278 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || || || || ||||| || ||||| Sbjct 997277 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 997227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318769180983966