Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1408 149 1e-30 seq1435 147 5e-30 seq1613 131 4e-25 seq3 123 6e-23 seq1564 107 4e-18 seq1336 98.7 2e-15 seq1723 89.7 1e-12 >seq1408 Length=2444343 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || ||||| || ||| | || |||||||| | || || ||||| Sbjct 1486441 ACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATCTTCC 1486500 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||| || |||||||| || || || || ||||||||||| |||||||| ||||||| Sbjct 1486501 ATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCCTATCCTGG 1486560 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTA-GGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || |||| |||||||| ||||| ||| ||||| ||||| || ||||| ||||| Sbjct 1486561 ATCTTGGCCTTTATATTTTCTATTGTATC-CTAGGGTTCAACCTCGAGAGTAATGGTCTT 1486619 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| ||| | | || |||||||| ||| Sbjct 1486620 CCCCGTAAGGGTTGTCATGAAAATCTGCATCTTG 1486653 >seq1435 Length=8499281 Score = 147 bits (162), Expect = 5e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || |||||||| || || || ||| Sbjct 997000 ATACCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCA 996941 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 996940 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGG 996881 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| ||||| || || || || || | ||| ||||| || || Sbjct 996880 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCC 996821 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || || || || || |||||||||||| Sbjct 996820 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 996767 >seq1613 Length=7518837 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || |||||||| || || | || || || || || || || Sbjct 7390882 GTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 7390823 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| || || || || || || || |||||||| ||||| || || Sbjct 7390822 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 7390763 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| || || ||||| || || || ||||| || || || || Sbjct 7390762 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTC 7390703 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 7390702 TTCACGAAAATCTGCAT 7390686 >seq3 Length=5570360 Score = 123 bits (136), Expect = 6e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 3108345 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 3108404 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| |||||||| ||| | ||||| || || ||| | Sbjct 3108405 GCTATATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 3108464 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 3108465 ATCAGCAGAGATGAAG 3108480 >seq1564 Length=1685133 Score = 107 bits (118), Expect = 4e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | ||||||||| | || || |||| || | || || ||| | | Sbjct 1484821 TGGTGGTACTTTGTGTCTAAAGGAGTGGAGTATTTAGACACGGTGTTTTTTATCTTGAGG 1484880 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| |||||| | ||| || |||||||||||||| | ||| |||||||| ||| Sbjct 1484881 AAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACGTTG 1484940 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| ||||||| ||||||| Sbjct 1484941 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAAG 1484977 >seq1336 Length=3010155 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || || |||||||| || || | ||||||||||| |||||| | Sbjct 1470236 CCATCTTCCAGTTGCTTGCCGGCAAAAATGAGTCTTAGCTGATCAGGAGGAATTCCTGCC 1470177 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| || ||||||||||||| ||||| | || |||| || || Sbjct 1470176 TTGTCCTGGATCTTGGCCTTTACATTTTCTAATGTATCTGAGGATTTAACCTTGAGAGTG 1470117 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| | ||| ||||||| | |||||||| ||| Sbjct 1470116 ATGTTCTTCTCCCTAATGGTTTTTATGTAAATCTGCATCTTG 1470075 >seq1723 Length=12986255 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 6654624 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 6654565 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 6654564 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 6654505 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 6654504 TTTACCCTGGATGCTGACTTCTAA 6654481 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434 ||||| || |||||| | || | || ||| | |||| || || | || | | || Sbjct 11368386 TGAATGCTACAGTCAGGCAAAGCACGTCCATCTCCAAGTTTCTTGCCGGTAAGA-TCAGT 11368328 Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494 || || ||||| |||| | ||||||||||||||| ||||| || |||||||||| || Sbjct 11368327 CTTTGCTGATCGAGAGGGAGTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTTTATT 11368268 Query 104495 GTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554 ||||| | ||| ||||| || | || | ||| || ||| | ||||||||||||| Sbjct 11368267 GTATCCAATGTTTCCACCTCAAGAATGATGGGCTT-CCCCTAA-AGGTTTTACAAATATC 11368210 Query 104555 TGCATTTTG 104563 | ||| ||| Sbjct 11368209 TTCATCTTG 11368201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151366431783236