Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1369 87.8 2e-12 >seq1369 Length=2758518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||| || |||||| | ||||| || | ||| |||| ||||| ||||| ||||| || Sbjct 2004180 TTAGGTTGCAAACATGTTAAAGGCATCCTGTTATATGGGCCTCCAGGTTGTGGTAAGACT 2004121 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAAT 164616 | |||||||| |||| |||| | || ||| | || || ||| | || ||| Sbjct 2004120 CTGTTGGCTCGACAGATTGG-CAAGATGTTGAATGCAAGAGAGCCC--AAAGTGGTCAAT 2004064 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || || ||||| ||||| || | || | ||| Sbjct 2004063 GGGCCAGAAATTCTTAACAAATATGTGGGAGAATCAGAGGCTAACATTCGTAAACTCTTT 2004004 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 2004003 GCTGATGCTGAAGAGGAGCAAAGGA 2003979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595855859317200