Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1690 156 6e-33 seq1523 111 2e-19 >seq1690 Length=7296525 Score = 156 bits (172), Expect = 6e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| |||| ||| |||||||||||| || |||| || ||||| |||||| Sbjct 2274628 GTCTGGAACAAGCGTTCATCATCCCATTCTGGATGCTCCTGTTTGAGGACATCACACACT 2274569 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| || ||||||||||| ||||| Sbjct 2274568 CTGTTGTGTTCCCGCAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGACCAAAG 2274509 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | || || | | || || |||||||| | | Sbjct 2274508 ACCTCCTGCCCCACAGCAAACCGCAGGTGCTCAGGAATATGAGGCGGGTAGATCATCTCC 2274449 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| |||||||| | ||| ||||||| || || | ||| |||| Sbjct 2274448 ACCTGAGTGTCTTTGACTGTGGGCGGATACACCTCGCCATTAATGATCT 2274400 Score = 150 bits (166), Expect = 3e-31 Identities = 215/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| || | || ||||| || || ||||| | |||| |||||||| || | Sbjct 2276194 GAACACTGAAGGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 2276135 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| || || ||||||||||||||||| Sbjct 2276134 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGTTTCCAGTAGT 2276075 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 | || || ||||| || ||| || ||||| | ||| || || ||||| || || | Sbjct 2276074 CAGGAGAACAGATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCCCCAAGTTCTA 2276015 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||| |||| ||||||||||| | || || ||||||||||||| | | | |||| Sbjct 2276014 CCATGGTCTCCCCGAAGATGGCATCTGGGCGAGGCTTTTCCACCAGAAGGGCAGGATACA 2275955 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 ||||| || || ||||| || || || || | || ||||| |||||||| |||| Sbjct 2275954 GCTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 2275895 Query 8973 CTG 8975 ||| Sbjct 2275894 CTG 2275892 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||||||||| || ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 2273508 TCTTACCCCGTGACCCAGGCCTTTGGTGAAAGCTGGACCTCGCTTAGGATCTGTCTTGAA 2273449 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| ||||||| |||||||| | || ||||||||||| || Sbjct 2273448 AAACTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGGGGTC 2273389 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | || ||| ||||||||||| | | | ||| || || | Sbjct 2273388 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 2273329 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| || ||||| Sbjct 2273328 TTTCTTCCCTGAAAAATGAGAA 2273307 >seq1523 Length=1859086 Score = 111 bits (122), Expect = 2e-19 Identities = 208/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 8669 TTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGG 8728 |||||||| ||||| | | | ||||| | ||| |||| ||||| || || Sbjct 1498307 TTGGGAACACGGAAGGAAACATAGGGACAAGCGTTGGTGTTGAGGCAGACCAGCTTCTTC 1498248 Query 8729 ATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAG 8788 | || || ||||||| || || |||| || || || || || || ||||||||| Sbjct 1498247 AGCGTAGCCGTCTTGACAATGTTGAAGCCCATTTCACCACCAAATGTACTCGGTTTCCAG 1498188 Query 8789 TAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGC 8848 || |||| || |||||| || | | |||||| |||||||| || ||||| || | Sbjct 1498187 TACTCCGGAGAACAGATGGGATTGCCTAGGAGGCCCTTGAGGGAGAAGGGAGCTCCAATT 1498128 Query 8849 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8908 || | || ||||| || ||||||| ||| ||| || ||| || | | | || | | Sbjct 1498127 TCTATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCAGGG 1498068 Query 8909 TACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTT 8968 || ||||||| || ||||||||||| || || || | || || || || ||||| Sbjct 1498067 TAGAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTC 1498008 Query 8969 TCTCCT 8974 |||||| Sbjct 1498007 TCTCCT 1498002 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 1487504 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 1487447 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 1487446 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 1487387 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| |||||| Sbjct 1487386 CAGGTATGAACTTCCTCC 1487369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708505607834480