Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1613 111 1e-19 seq158 96.9 3e-15 seq1435 95.1 1e-14 seq1495 93.3 4e-14 >seq1613 Length=7518837 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || ||||| ||||| |||| |||| ||||| ||||||||| || || | ||| || Sbjct 7390919 TTAGACCCCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTA 7390860 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| |||||||||||| || ||| | ||||| | || ||||| || Sbjct 7390859 GTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTC 7390800 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 || || || || || || || | || || ||||||||| ||| ||||| | | Sbjct 7390799 GGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGG 7390740 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || || || || || ||||| || |||||||| Sbjct 7390739 CTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390686 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 7389544 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7389485 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 7389484 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7389425 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 7389424 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 7389365 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || || ||||| || |||||||| Sbjct 7389364 TCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389318 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 7389772 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7389713 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 7389712 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7389653 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 7389652 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 7389593 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || || || ||||| || |||||||| Sbjct 7389592 TCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389546 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 7389316 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7389257 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 7389256 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7389197 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 7389196 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 7389137 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 7389136 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389090 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 7390000 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7389941 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 7389940 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7389881 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 7389880 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 7389821 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 7389820 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389774 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 7390228 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7390169 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 7390168 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7390109 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 7390108 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 7390049 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 7390048 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390002 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 7390456 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7390397 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 7390396 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7390337 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 7390336 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 7390277 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 7390276 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390230 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | |||| |||| ||||| ||| || ||||| || | ||| || || | Sbjct 7390684 CCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 7390625 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || ||| | ||||| | || ||||| || || || Sbjct 7390624 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGG 7390565 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| ||| ||||| | | || || Sbjct 7390564 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACC 7390505 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| || |||||||| Sbjct 7390504 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390458 >seq158 Length=5104435 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| ||| || || || || | || || || | |||| | ||||| Sbjct 4734277 CACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCCTC 4734218 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| ||| |||| || | | ||||| || || || || || || ||||| | Sbjct 4734217 CAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 4734158 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || || || | | |||||| | | || ||||| | |||||||| || Sbjct 4734157 GATTTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACGTCGAGGGTGATGGTCTT 4734098 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || |||||||||||||||||| Sbjct 4734097 GCCCGTCAGGGTCTTCACAAAGATCTGCATG 4734067 >seq1435 Length=8499281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | ||||| ||||| || || || || || | ||| ||||| Sbjct 996997 CCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 996938 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || || Sbjct 996937 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 996878 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||||||| | | ||||| | | || || Sbjct 996877 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 996818 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 996817 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 996771 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | ||||| ||||| || || || || || | ||| ||||| Sbjct 997225 CCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 997166 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || || Sbjct 997165 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 997106 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| || ||| ||||| | | || || Sbjct 997105 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCACC 997046 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 997045 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 996999 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | ||||| ||||| || || || || || | ||| ||||| Sbjct 997453 CCGCCTCTCAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 997394 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || || Sbjct 997393 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 997334 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || || ||||| || ||| ||||| | | || || Sbjct 997333 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCACC 997274 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 997273 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 997227 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || || || || | ||| ||||| | |||| | ||| || Sbjct 997664 CACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 997605 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || ||||||| | || ||||| || || || || || || || || | Sbjct 997604 CAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 997545 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || ||| ||||| | | || || || | |||||||| || Sbjct 997544 GATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTT 997485 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 997484 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 997455 >seq1495 Length=1971954 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || || || || || | || || || | |||| | ||||| Sbjct 943324 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCCTC 943383 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||||||| ||| |||| || | | ||||| || || ||||| || || ||||| | Sbjct 943384 CAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTG 943443 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| || || || | | |||||| | | || || || | |||||||| || Sbjct 943444 GATTTTAGCTTTAACATTCTCCATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 943503 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || |||||||||||||||||| Sbjct 943504 GCCCGTCAGGGTCTTCACAAAGATCTGCATG 943534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448279056912120