Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1392 93.3 4e-14 seq3 86.0 7e-12 seq1723 84.2 2e-11 >seq1392 Length=2567125 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 |||||||| ||||||| | ||||||| ||| | ||||| ||| || | | | Sbjct 1090773 AGTTCTTCCAGGGTTTCAAACTGAACAAGATCAGCTTCTAATGAGACACAGAAAGCCTGG 1090832 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 1090833 CTGAATGTCCAATTCCTTGCGTCTTCAGAAAAATAAAAACATTTACTTCCAAATCCAATC 1090892 Query 130773 CATCCCTTTGGGCA 130786 ||| |||||||| Sbjct 1090893 CATTGTTTTGGGCA 1090906 >seq3 Length=5570360 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| |||| |||| ||| | ||||| | | | Sbjct 3125012 TTTAAAAATCCGCATCCAAGGTGAAGACATGATCTGTGGTTTCCGCCATAACTGCAAAAC 3124953 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || ||||| || || || || Sbjct 3124952 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 3124893 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 3124892 CCATAAAATCAAAGGGATTTTC 3124871 >seq1723 Length=12986255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| | | ||| ||| ||| | | ||||| | |||| Sbjct 6654476 TTCATTTAGAAGTCAGCATCCAGGGTAAAAGAATTCTCTGTTGGACTGGACATCACTCCC 6654535 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| Sbjct 6654536 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 6654595 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||||||||| Sbjct 6654596 TTCTCCATAAAGTCAAATGGATTTTC 6654621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531886392137080