Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1020 96.9 9e-15 seq1626 89.7 1e-12 >seq1020 Length=3688603 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 998112 GCTCAGCAGCTGTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 998053 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| ||||||||| |||| || || || | Sbjct 998052 CTCTACAAAGATTCCTGTAATCGGAAGAGTAACCAGCAGAACCTGGGAACGATCAAATGC 997993 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| ||||| || || || | ||||| ||| Sbjct 997992 AGCAATCTATGCACAGAAATAGTAGAATATACC 997960 Score = 84.2 bits (92), Expect = 6e-11 Identities = 134/191 (70%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| | || | |||| || || ||||||| |||| || || || ||||||||| Sbjct 987794 CAGAGCATACAAGAAATTCCTGATGACCTGAAGCAACTTTATAAGACTGTGTGGGAAATT 987735 Query 365011 TCCATGCGAAC---TCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGC 365067 || | ||| ||||| | ||||| ||||| | || |||||||| ||| ||| Sbjct 987734 TCTCAGAAAACCATTCTCA---AGATGGCAGCCGAGAGAGGCGCTTTTATTGATCAAAGC 987678 Query 365068 CAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTC 365127 ||||| || ||| | ||| || |||| | || | ||| || || |||||| ||| Sbjct 987677 CAGTCTTTGAACATCCACATTGCTGAGCCTAACTATGGCAAACTCACTAGCATGCACTTC 987618 Query 365128 TACGGGTGGAA 365138 ||||| ||||| Sbjct 987617 TACGGCTGGAA 987607 >seq1626 Length=1472199 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 111390 ACAAATGCAAATGAACTTGCA-GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 |||||||| |||||||| | |||| | || ||||| ||||||| ||||| || || Sbjct 523208 ACAAATGCTAATGAACTGTCTTGCAAGGGA-GTGAAAATCTGGGATGCCAATGGGTCCCG 523266 Query 111449 TGACTTTCTAGATTCAGT-TGGTCTTGTC-GACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||||| | || ||| ||| || || | || |||||||| ||| | || |||||| Sbjct 523267 AGACTTCTTGGA--CAGCCTGGGATTCTCTGCCAGAGAAGAAGGGGATTTAGGCCCAGTT 523324 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 ||||| ||||||||| | || ||||| ||||| |||||| Sbjct 523325 TACGGCTTTCAATGGAGGCATTTTGGGGCAGAATACAAA 523363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303317412794594