Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1613 122 7e-23 seq1435 95.1 1e-14 >seq1613 Length=7518837 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 7389545 CCCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 7389486 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | ||||||| || || || || | || |||| ||| ||||| || Sbjct 7389485 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 7389426 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 7389425 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 7389368 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| ||||||||||| || || || ||||||||||| Sbjct 7389367 ACCTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389318 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 7389773 CCCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 7389714 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | ||||||| || || || || | || |||| ||| ||||| || Sbjct 7389713 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 7389654 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 7389653 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 7389596 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| ||||||||||| || || || ||||||||||| Sbjct 7389595 ACCTCCAGGGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389546 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 7389317 CCCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 7389258 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | ||||||| || || || || | || |||| ||| ||||| || Sbjct 7389257 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 7389198 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 7389197 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 7389140 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || ||||||||||| Sbjct 7389139 ACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389090 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 7390001 CCCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 7389942 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | ||||||| || || || || | || |||| ||| ||||| || Sbjct 7389941 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 7389882 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 7389881 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 7389824 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || ||||||||||| Sbjct 7389823 ACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389774 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 7390229 CCCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 7390170 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | ||||||| || || || || | || |||| ||| ||||| || Sbjct 7390169 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 7390110 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 7390109 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 7390052 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || ||||||||||| Sbjct 7390051 ACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390002 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 7390457 CCCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 7390398 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | ||||||| || || || || | || |||| ||| ||||| || Sbjct 7390397 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 7390338 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 7390337 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 7390280 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || ||||||||||| Sbjct 7390279 ACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390230 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 7390685 CCCACCTCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 7390626 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | ||||||| || || || || | || |||| ||| ||||| || Sbjct 7390625 CAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGG 7390566 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || ||| || | | | ||||||| ||||||| Sbjct 7390565 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCC 7390508 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || ||||||||||| Sbjct 7390507 ACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390458 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || || || || || ||||||||||| | || ||| | || Sbjct 7390898 CAGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 7390839 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || || || || | || |||| ||| ||||| || | |||||| || || Sbjct 7390838 CTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATC 7390779 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||||| ||||||| |||| ||||||| Sbjct 7390778 CTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 7390721 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || || || ||||||||||| Sbjct 7390720 GTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390686 >seq1435 Length=8499281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||| || | | || | | || Sbjct 996982 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 996923 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| ||| | || |||| ||| ||||| || | |||||| || || Sbjct 996922 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 996863 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||||| ||||||| |||| |||||||| Sbjct 996862 TGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGG 996805 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || |||||||| || || || || |||||||||||| Sbjct 996804 TCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 996767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405077301499330