Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1020 134 2e-26 seq1419 111 2e-19 seq3 107 2e-18 >seq1020 Length=3688603 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 989841 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 989900 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 989901 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 989960 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 989961 CTGTTTCTTACACCATA 989977 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || |||| || | || ||||| || || || || || || | Sbjct 994683 CATAGGTTTCATATGGGCCATCCTCCTTGGACAGGTCACAGCTGGCTTCCAAGGCTCCAT 994742 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 994743 AATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCAAAAGGAT 994802 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 994803 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGGCGATGGC 994862 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 994863 GTTTATTTGA 994872 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 999548 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 999607 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | |||||||||| | | || || ||||||| Sbjct 999608 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCGAGGAACTCAAAGATGTCTAAATGCCA 999667 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 999668 AGGCTCCAGGTAAATAGC 999685 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | ||| || || || || || || || || | Sbjct 1011583 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGA 1011642 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 1011643 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 1011702 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 1011703 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 1011748 >seq1419 Length=2355583 Score = 111 bits (122), Expect = 2e-19 Identities = 384/588 (65%), Gaps = 16/588 (3%) Strand=Plus/Minus Query 32648 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 32707 |||||| || | || || || || ||||||| ||| || |||| | | |||||| || Sbjct 2073753 TTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCCAGTAATTCATT 2073696 Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 |||||| |||| |||||| || | || || || | ||| || || | Sbjct 2073695 GGAAAATGTGATCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGCGTGAAAG- 2073637 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 ||| | ||| ||||| | |||||| ||||| | | | || ||||||||| | Sbjct 2073636 --CAGCAGAGAT--TTCCTCC-ACTGCCCCAAAGCCTACCACTCATTCTCCATAA--GTT 2073584 Query 32828 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 ||| || | | ||| | | |||| || || |||| | |||||| ||||||| || Sbjct 2073583 GCT-TCTT-TGTCCCCAGTCAGGCCCTGTCAGCTTTCTCT---ACACAAAGCATTGTTTC 2073529 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947 |||||||| |||| | || | || || | |||||||| | || |||| | || Sbjct 2073528 AATAGCATTGAAGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGAG 2073469 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 ||| || ||||| |||| | ||| || ||| | |||||| || |||| || | || Sbjct 2073468 ACTCTATATTTCAGAATATAAGTTGTCCATGTCACCTTGAAAGCCACAGAAACACATTGC 2073409 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 || ||||||||||||| || || |||| | | | |||||| | ||| || Sbjct 2073408 TTCTGTAATCTGTACTTTTGGACGAAATTGCGGCACCAGGCTTTCATATCCAGCTCCATC 2073349 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33127 ||| ||||||| || |||| | | || ||||| | | || | || | || Sbjct 2073348 ACTTGCTGCAACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCAG-GG 2073290 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 ||||| | | || || || || ||| || || || |||||||||| || ||||| Sbjct 2073289 CTTCCAGTGCTGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAGCCTC 2073230 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || || | ||||| | ||| ||| || |||||| | |||||||| Sbjct 2073229 AGCTTTCTGGTACATCTGCCAAATGCCACGATATTTGAGAGGAAAAAT 2073182 >seq3 Length=5570360 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 3108478 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 3108419 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 3108418 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 3108360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 |||||||||||||| ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 3102242 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 3102183 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33153 || || || |||| ||| || || ||||||| | || ||| || |||| Sbjct 3102182 TACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTGGATA 3102134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633614836493200