Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1495 123 2e-23 seq158 118 9e-22 seq1472 109 5e-19 >seq1495 Length=1971954 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| |||| || ||| | | Sbjct 943533 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 943474 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || ||||| || || |||||||||||| Sbjct 943473 GACACCATGGAG--AATGTTAAAGCTAAAATCCAA-GACAAGGAGGGCATTCCACCTGAC 943417 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||||||||||||||| | || || | |||||| | || ||| Sbjct 943416 CAGCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCCGCACTCTCTCAGACTAC 943357 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || || || ||||| Sbjct 943356 AATATCCAGAAAGAGTCCACCCTGCACTTGGTGCT 943322 >seq158 Length=5104435 Score = 118 bits (130), Expect = 9e-22 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| |||| || ||| | | Sbjct 4734068 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGACGTTGAGCCCAGT 4734127 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || ||||| || || || ||||||||| Sbjct 4734128 GACACCATTGAG--AATGTTAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 4734184 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||||||||||||||| | || || | |||||| | || ||| Sbjct 4734185 CAGCAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCCGCACTCTCTCAGACTAC 4734244 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || || || ||||| Sbjct 4734245 AATATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 4734279 >seq1472 Length=2102760 Score = 109 bits (120), Expect = 5e-19 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | || || ||| | | Sbjct 658894 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 658953 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| || ||||| || || || ||||||||| Sbjct 658954 GACACCATTGAG--AATGTTAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 659010 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | ||||||||||||||||| | ||||| | |||||| | || ||| Sbjct 659011 CAGCAGCATCTGATTTTTGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCAGACTAC 659070 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || | ||| ||||| || || || ||||| Sbjct 659071 AATATCCAGAGAGACTCCACCCTGCACTTGGTGCT 659105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433316555672105