Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1495 134 1e-26 seq158 122 7e-23 seq1472 116 3e-21 seq1613 100 2e-16 seq1435 93.3 4e-14 seq1307 91.5 1e-13 >seq1495 Length=1971954 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 943533 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 943474 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| |||| || | ||| ||||| |||||||||||||| |||||||| || || Sbjct 943473 GACACCATGGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCAG 943414 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||||||| | ||||| |||||| |||| || ||||| Sbjct 943413 CAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCCGCACTCTCTCAGACTACAAT 943354 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| |||||| | || || || | || |||| || || Sbjct 943353 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGGGGCGG 943307 >seq158 Length=5104435 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 4734068 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGACGTTGAGCCCAGT 4734127 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| ||||| |||||||||||||| || ||||| || || Sbjct 4734128 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 4734187 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||||||| | ||||| |||||| |||| || ||||| Sbjct 4734188 CAGCGTCTGATTTTTGCCGGCAAACAGCTGGAGGACGGCCGCACTCTCTCAGACTACAAT 4734247 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| ||||| Sbjct 4734248 ATCCAGAAAGAGTCCAC 4734264 >seq1472 Length=2102760 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 658894 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 658953 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| ||||| |||||||||||||| || ||||| || || Sbjct 658954 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 659013 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| || ||||||||||||||| | || || |||||| |||| || ||||| Sbjct 659014 CAGCATCTGATTTTTGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCAGACTACAAT 659073 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || | ||| |||||| | || || || Sbjct 659074 ATCCAGAGAGACTCCACCCTGCACTTGGT 659102 >seq1613 Length=7518837 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | ||||| || || |||| || || ||||| ||| Sbjct 7389089 GATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 7389148 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 7389149 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 7389208 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||| || ||| | |||||| |||||| | || || ||||| Sbjct 7389209 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 7389268 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 7389269 CATCCAGAAGGAGTCCAC 7389286 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | ||||| || || |||| || || ||||| ||| Sbjct 7389317 GATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAG 7389376 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 7389377 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 7389436 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||| || ||| | |||||| |||||| | || || ||||| Sbjct 7389437 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 7389496 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 7389497 CATCCAGAAGGAGTCCAC 7389514 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | ||||| || || |||| || || ||||| ||| Sbjct 7389545 GATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAG 7389604 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 7389605 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 7389664 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||| || ||| | |||||| |||||| | || || ||||| Sbjct 7389665 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 7389724 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 7389725 CATCCAGAAGGAGTCCAC 7389742 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | ||||| || || |||| || || ||||| ||| Sbjct 7389773 GATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 7389832 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 7389833 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 7389892 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||| || ||| | |||||| |||||| | || || ||||| Sbjct 7389893 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 7389952 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 7389953 CATCCAGAAGGAGTCCAC 7389970 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | ||||| || || |||| || || ||||| ||| Sbjct 7390001 GATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 7390060 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 7390061 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 7390120 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||| || ||| | |||||| |||||| | || || ||||| Sbjct 7390121 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 7390180 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 7390181 CATCCAGAAGGAGTCCAC 7390198 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | ||||| || || |||| || || ||||| ||| Sbjct 7390229 GATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 7390288 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 7390289 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 7390348 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||| || ||| | |||||| |||||| | || || ||||| Sbjct 7390349 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 7390408 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 7390409 CATCCAGAAGGAGTCCAC 7390426 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | ||||| || || |||| || || ||||| ||| Sbjct 7390457 GATGCAGATTTTCGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 7390516 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 7390517 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 7390576 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || ||||| || ||| | |||||| |||||| | || || ||||| Sbjct 7390577 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 7390636 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || ||||| Sbjct 7390637 CATCCAGAAGGAGTCCAC 7390654 >seq1435 Length=8499281 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || ||||| || || || || || | ||||| || || |||| || || ||||| Sbjct 996765 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 996824 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| ||| ||| | || | |||| || || || || |||||||| || || || Sbjct 996825 CCCAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCT 996884 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||| ||||| ||| | || ||| |||||| | || ||| Sbjct 996885 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 996944 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 996945 TACAACATCCAGAAAGAGTCGACC 996968 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| | Sbjct 996999 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 997058 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| || || || || || Sbjct 997059 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 997118 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 997119 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 997178 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 997179 ATCCAGAAAGAGTCGACC 997196 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| | Sbjct 997227 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 997286 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| || || || || || Sbjct 997287 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 997346 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 997347 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 997406 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 997407 ATCCAGAAAGAGTCGACC 997424 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| | Sbjct 997455 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 997514 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| || || || || || Sbjct 997515 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 997574 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 997575 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 997634 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 997635 ATCCAGAAAGAGTCGACC 997652 >seq1307 Length=3323444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| | || | | || || || ||||||||||||| | ||| Sbjct 1215964 AGATGCAGATCTTTGTGAGGACGCTGATGGGGAAGACCATCACTCTTGAAGTCCAGCCCA 1215905 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| ||||| |||||||||||||| || | ||||| | Sbjct 1215904 GTGACACCACTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCTGCCCGACC 1215845 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| | |||| ||||||||| |||||||| || ||| | | || |||| Sbjct 1215844 AGCAGTGTCTGGTTTTTGTGGGCAAACAGCTAGAGGATGGCCTCACTCTTACAGAGTACA 1215785 Query 22397 ACATTCAAAAAGA 22409 | || || ||||| Sbjct 1215784 ATATCCAGAAAGA 1215772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419716914852355