Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1723 87.8 3e-12 seq3 87.8 3e-12 >seq1723 Length=12986255 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || || ||||| || || ||| | || || ||||| |||||| Sbjct 6656004 GTAGCCTTTGCCGCAGTGGAAGGAATCTTTTTTTCTGGCTCTTTTGCATCCATATTCTGG 6655945 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | ||||||||| ||||| || || || ||||| || ||||| || Sbjct 6655944 CTCAAGAAACGAGGACT-GATGCCCGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 6655886 Query 42827 CGAGG 42831 |||| Sbjct 6655885 TGAGG 6655881 >seq3 Length=5570360 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || ||||||||||| | || || Sbjct 3108345 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 3108404 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| | | |||| | ||||| |||||||| || || || ||||| Sbjct 3108405 GCTATATTCTGGCTAAAGAAAAGAGGTCT-TATGCCTGGACTCACTTTTTCCAATGAACT 3108463 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 3108464 CATCAGCAGAGATGA 3108478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944313620211920