Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1690 174 2e-38 seq1523 104 3e-17 >seq1690 Length=7296525 Score = 174 bits (192), Expect = 2e-38 Identities = 219/301 (73%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||| |||||||| || || ||||| |||||||| | Sbjct 2276193 AACACTGAAGGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGA 2276134 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| || || || || ||||||||||||||||| | Sbjct 2276133 GGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGTTTCCAGTAGTC 2276074 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || ||||| || ||| || ||||||||||| || || ||||| || || | Sbjct 2276073 AGGAGAACAGATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCCCCAAGTTCTAC 2276014 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| |||| |||||||||||| | || || || ||||| || | | | ||| || || Sbjct 2276013 CATGGTCTCCCCGAAGATGGCATCTGGGCGAGGCTTTTCCACCAGAAGGGCAGGATACAG 2275954 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | ||| |||||||| ||||| ||||| ||||| || |||||||| || Sbjct 2275953 CTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTCC 2275894 Query 9175 T 9175 | Sbjct 2275893 T 2275893 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||| | || ||| ||||||| || || || |||||||| ||||| || || Sbjct 2274628 GTCTGGAACAAGCGTTCATCATCCCATTCTGGATGCTCCTGTTTGAGGACATCACACACT 2274569 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | || ||||| | |||||| Sbjct 2274568 CTGTTGTGTTCCCGCAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGACCAAAG 2274509 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||| | || || | | |||| || | ||| | | Sbjct 2274508 ACCTCCTGCCCCACAGCAAACCGCAGGTGCTCAGGAATATGAGGCGGGTAGATCATCTCC 2274449 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| ||||| ||||||| || || | ||| Sbjct 2274448 ACCTGAGTGTCTTTGACTGTGGGCGGATACACCTCGCCATTAAT 2274405 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 10117 TCGCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCC 10176 ||| ||||||||| || |||| ||| | |||||||| || |||||| ||| ||| Sbjct 2273512 TCGGTCTTACCCCGTGACCCAGGCCTTTGGTGAAAGCTGGACCTCGCTTAGGATCTGTCT 2273453 Query 10177 TAAAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGG 10236 | ||||| || || || ||||| || | ||||| || ||||||| || |||||||||| Sbjct 2273452 TGAAAAACTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGG 2273393 Query 10237 GATCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCA 10296 | || ||||| || | || | | | || ||| |||||||||| | ||||||| || | Sbjct 2273392 GGTCAGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTTGAATCAGGAA 2273333 Query 10297 G 10297 | Sbjct 2273332 G 2273332 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || ||||||| | |||| || || || ||||| || || ||| ||| | Sbjct 2271876 CTTACGTGTTGAACAGTTTTCACCATAGAATCCTGTGCGCGTGCAGTCACACTGATACTG 2271817 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || ||||||| ||||||||||| || Sbjct 2271816 GTCAAATCCCACACTCATACATACGCCTCGGTTTTGACACGGGTTGGAACAGCAAGGATT 2271757 Query 10960 GGCTGCAATTTAAAAGATAGAATA 10983 ||| ||| |||||| || ||| Sbjct 2271756 TGCTACAA--TAAAAGTAAGGATA 2271735 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 9963 AACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGT 10022 ||||||||| ||||| || ||||||||||| || ||||| |||||||| | ||||| || Sbjct 2274275 AACCTGATATTTCATTTTTCCATCCTTGAAAAGGCGCAGTTTATGCTGTCTATCCAAAGT 2274216 Query 10023 TTCGCCGTAGATGTGACTGAGATCGACCT 10051 ||| || || || ||||| | ||| |||| Sbjct 2274215 TTCACCATAAATATGACTTAAATCCACCT 2274187 >seq1523 Length=1859086 Score = 104 bits (114), Expect = 3e-17 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || | || || || || || || |||||||||||| Sbjct 1498244 GTAGCCGTCTTGACAATGTTGAAGCCCATTTCACCACCAAATGTACTCGGTTTCCAGTAC 1498185 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| || | | ||| || || | ||| || ||||| || | || Sbjct 1498184 TCCGGAGAACAGATGGGATTGCCTAGGAGGCCCTTGAGGGAGAAGGGAGCTCCAATTTCT 1498125 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || ||||||| ||| | || || | || | || |||| ||| Sbjct 1498124 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTC-AAGAAGCAGCCCAGGGTA 1498066 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 1498065 GAACTCCAAGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 1498006 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 1498005 TCCTACAAG 1497997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723708396017800