Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1020 114 2e-20 >seq1020 Length=3688603 Score = 114 bits (126), Expect = 2e-20 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| || ||||||| ||| || || || |||| Sbjct 987602 CCTGCTTCCAGCCGTAGAAGTGCATGCTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGT 987661 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||||| |||||||||||| || || ||| ||||| | || || ||||| |||| | Sbjct 987662 GGATGTTCAAAGACTGGCTTTGATCAAT-AAAAGCGCCTCTCTCGGCTGCCATCTTGAGA 987720 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||| ||||| ||||| |||||||| ||||| Sbjct 987721 ATGGTTTTCTGAGAAATTTCCCACACAGTCTT 987752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795133661233520