Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq158 96.9 2e-15 seq1495 87.8 1e-12 >seq158 Length=5104435 Score = 96.9 bits (106), Expect = 2e-15 Identities = 168/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || |||||| |||| || || ||||| |||| |||| ||||| || ||||| Sbjct 4734302 CAATGAT-GCCGCCCCGCAGGCGGAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTG 4734244 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || || | | | ||| | || |||| ||||| ||| ||||||| | ||||||||| Sbjct 4734243 TAGTCTGAGAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGG 4734184 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TG 39661 || | || | ||| || ||||| ||||| ||||| || | | ||||| || Sbjct 4734183 TCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTG 4734124 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 ||| | ||||| | || || || || ||||| | || || || ||||||||||||| Sbjct 4734123 GGCT--CAACGTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGT 4734066 Query 39722 C 39722 | Sbjct 4734065 C 4734065 >seq1495 Length=1971954 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/241 (69%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || |||||| |||| || || ||||| |||| ||| ||||| || ||||| Sbjct 943299 CAATGAT-GCCGCCCCGCAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTG 943357 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || || | | | ||| | || |||| ||||| ||| ||||||| | ||||||||| Sbjct 943358 TAGTCTGAGAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGG 943417 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TG 39661 || | || | ||| || ||||| ||||| ||||| || | | ||||| || Sbjct 943418 TCAGGTGGAATGCCCTCCTTGTCTTGGATTTTAGCTTTAACATTCTCCATGGTGTCACTG 943477 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 ||| | || || | || || || || ||||| | || || || ||||||||||||| Sbjct 943478 GGCT--CAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGT 943535 Query 39722 C 39722 | Sbjct 943536 C 943536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347360425860311