Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1966 168 3e-36 seq1408 100 1e-15 seq842 100 1e-15 seq1805 96.9 1e-14 seq1263 93.3 2e-13 seq1446 84.2 9e-11 >seq1966 Length=568079 Score = 168 bits (186), Expect = 3e-36 Identities = 459/697 (66%), Gaps = 13/697 (2%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || ||||| ||||| || || ||||||| || || || || || | ||| | || || Sbjct 488025 GCCATTGGCATTGACCTGGGCACCACCTACTCGTGCGTGGGGGTGTTCCAGCACGGCAAG 487966 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGT----TT 451029 || || || || || || ||||| || || || ||||| || | || || || Sbjct 487965 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACTCC--CA--GCTACGTGGCCTT 487910 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCA 451088 ||||| | || | || | ||| | || || || | | | |||| ||| || Sbjct 487909 CACGGACACCGAGCGGCTCATTGGGGATGCAGCCAAGAACCA-GGTAGCCATGAATCCCC 487851 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 | ||||| || | |||||| |||||| | || ||| | | | | ||||| | || | Sbjct 487850 AGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCCTGTAGTGC 487791 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 || ||| | ||| | | ||| | | ||| | ||| | |||| |||||| | | Sbjct 487790 AATCAGACATGAAACTTTGGCCTTTTCAAGTAATCAATGACGAAGGCAAGCCCAAGGTAA 487731 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTC 451268 || || ||||| || | ||| |||| ||||| |||||||| |||||||| | Sbjct 487730 TGGTGTCCTACAAAGGGGAGAAAAAAGCTTTCTACCCTGAGGAAATTTCTTCTATGGTGC 487671 Query 451269 TTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAA 451328 | ||||| ||||| || || || || | | | || || || || |||| || | Sbjct 487670 TGACTAAGATGAAGGAGACTGCTGAGGCTTTTTTGGGCCACCCTGTCACCAATGCTGTGA 487611 Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 | ||||| || |||||||||||||| | ||||| || || || || |||||||| | Sbjct 487610 TCACTGTGCCAGCTTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGA 487551 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 |||| ||| | ||||| || ||||||| || ||||| ||||| ||||| | || |||| Sbjct 487550 TTGCGGGTCTCAATGTGCTAAGAATTATCAACGAACCCACAGCTGCTGCCATTGCCTATG 487491 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | ||| ||| | || | ||| | | || || | | |||||| | ||||||| Sbjct 487490 GCTTAGATAAAGC---AGGTCAGGGAGAGAGACATGTTCTGATCTTTGATCTGGGTGGAG 487434 Query 451509 GAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCA 451568 | || |||| || || || | || || |||||| | ||||| |||||||| || Sbjct 487433 GCACATTTGATGTGTCCGTCCTGACCATAGATGATGGGATTTTTGAGGTAAAGGCCACAG 487374 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || || || || || || |||| || Sbjct 487373 CTGGGGACACCCACCTGGGTGGAGAGGACTTTGACAA 487337 >seq1408 Length=2444343 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | | ||| || || || || || |||||||| || |||||| | | Sbjct 1486649 ATGCAGATTTTCATGACAACCCTTACGGGGAAGACCATTACTCTCGAGGTTGAACCCTAG 1486590 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| ||| || || || || |||| ||||||||||||||||||||| Sbjct 1486589 GATACAATAGAAAATATAAAGGCCAAGATCCAGGATAGGGAAGGAATTCCTCCTGATCAG 1486530 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||| | ||||||||| ||||| | || || || Sbjct 1486529 CAAAGACTGATCTTTGCTGGCAAGCAAATGGAAGATGGACATGCTTTGTCTGACTACAAC 1486470 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 | | | ||||| | || ||||| | || || ||||| Sbjct 1486469 AATCAAAAGGAATCCACTCTTCATCTTGTGTTGAGACT 1486432 >seq842 Length=3867019 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 2767927 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 2767868 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | | || || ||||| || Sbjct 2767867 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATCATCAATGAGCC 2767815 Score = 84.2 bits (92), Expect = 9e-11 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 451195 AAAGCCCTATATTCAAGTAAATTATAAAGGTG---AAACTAAAACTTTTGCTCCTGAAGA 451251 ||| || || |||||||| || | ||||| |||| || || |||||||||||||| Sbjct 2768380 AAAACCATACATTCAAGTTGATATTGGAGGTGGGCAAACAAAGACATTTGCTCCTGAAGA 2768321 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 |||||| | |||||||| ||||||||||| ||||| || || Sbjct 2768320 AATTTCTGCCATGGTTCTCACTAAAATGAAGGAAACTGCTGA 2768279 >seq1805 Length=908585 Score = 96.9 bits (106), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 623984 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 623927 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 623926 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 623867 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 623866 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 623807 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACC 96282 || || || | || |||||| ||||||| |||| || |||||| ||||| Sbjct 623806 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACC 623751 >seq1263 Length=3465875 Score = 93.3 bits (102), Expect = 2e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||||| || ||||| ||||||| ||| ||||||| Sbjct 2193175 GCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAA 2193116 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014 || ||||| ||||| ||||| |||||| ||||| || || Sbjct 2193115 GTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCC 2193075 >seq1446 Length=8399027 Score = 84.2 bits (92), Expect = 9e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || || ||||| || || || |||| ||||||| |||||| | ||||||||||| Sbjct 7577171 GCCACGAAGGATGCTGGTCAGATATCTGGACTAAATGTACTTCGAGTAATTAATGAACCC 7577112 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 ||||| ||||| || || ||||| |||| |||||| |||| Sbjct 7577111 ACAGCTGCTGCACTGGCTTATGGTCTAGACAAATCAGAAGA 7577071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975663544796036