Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1966 163 2e-34 seq1263 118 8e-21 seq2056 109 4e-18 seq323 95.1 9e-14 seq842 86.0 5e-11 >seq1966 Length=568079 Score = 163 bits (180), Expect = 2e-34 Identities = 934/1472 (63%), Gaps = 27/1472 (2%) Strand=Plus/Plus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||| || |||||||||||||||||||| || | ||||| || || || || ||||| || Sbjct 486572 GGCTGTTACATTAAGAATACCATTGGCGTCGATGTCAAAGGTCACCTCGATCTGAGGAAC 486631 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 ||||| | ||||| ||||| || || | ||| |||||| ||||| || Sbjct 486632 TCCTCTGGGTGCAGG-GGGATTCCAGTCAGGTCAAAGCGTCCCAGCAGGTTATTGTCCCG 486690 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | | || |||||| | | ||||| || | | || |||||||| || Sbjct 486691 TGTCATGGCCCTCTCGCCCTCGTACACCTGGATCAATACCCCTGGCTGGTTATCTGAGTA 486750 Query 517438 AGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 || ||||| | |||| | | || || || || | ||| | | || | | Sbjct 486751 GGTGGTAAAGA-TCTGCGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTGATCAGGACAG 486809 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | || || || || || || || || || || |||| ||||| | | | | Sbjct 486810 TCATCACGCCCCCCGCCGTCTCCAACCCTAGGGACAGGGGAGCCACATCCAACAAAAGCA 486869 Query 517557 TATTTTGAAGTTTTTCATCAGTTT-GACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || | |||||| | | | ||| ||| ||| ||||| || | ||||| ||| Sbjct 486870 GGTCCTGTACCTTTTCAGACTTGTCGCCCATCAA-AATGGCTGCCTGTACTGCAGCCCCA 486928 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || || || || ||||| || || | | | || || | || || || | | Sbjct 486929 TAGGCCACCGCCTCATCGGGGTTGATGCTCTTGTTGAGATCACGGCCGTTAAAGTAGTCC 486988 Query 517676 GAAAGAAGTTGTCTTACCTT-AGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || || ||| | ||| ||| ||||| | || || || ||||| ||||| ||||| Sbjct 486989 TGCAGCAGCC-TCTGAACTTTAGGGATACGGGTGGAGCCCCCTACTAAAACAATGTCATG 487047 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | | | ||||||| || | ||| | | | || || || || || ||| || Sbjct 487048 GATTTTAGCCTTATCCATCTTCGCATCACGAAGAGCCTTCTCCACAGGCTCCAGAGT-GC 487106 Query 517795 TC-TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA 517852 || |||||| ||||| ||| | ||||| || ||||| || || ||| | || || Sbjct 487107 TCCTAAACAGGTCTGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGACGTGTAGAA 487164 Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 || || ||||| || | ||||||| ||| | | | || || || || || | Sbjct 487165 GTCGATGCCTTCAAAAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTGGATGACAGCGT 487224 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGAT 517967 | || || | || || || || | || | | | || |||| | |||| |||| Sbjct 487225 CCTCTTGGCCCTCTCGCAGGCGGTGCGCAGCCGCCTCACAGCCCGCTTGTTCTGACTGAT 487284 Query 517968 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 518027 || | || | ||| |||||||| ||||| ||| | | ||||| | || | Sbjct 487285 G----TCCTTCTTGTGTTTCCTCTTGAACTCTTCCACAAAGTGGCTCACAAGCCTGTTGT 487340 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 |||| || || || |||| | || | || | || || |||| | |||| |||| Sbjct 487341 CAAAGTCCTCTCCACCCAGGTGGGTGTCCCCAGCTGTGGCCTTTACCTCAAAAATCCCAT 487400 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | || | | || | | |||||| || || ||||||| |||||| || || |||| Sbjct 487401 CATCTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAGAACAT 487460 Query 518148 TCATTTCTT--TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 | ||| || | || ||| | | ||| ||||| |||| |||||||| || ||||| Sbjct 487461 GTCTCTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCTGTGGGTTC 487518 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 || |||||||| | ||||| ||||| ||||| |||||||| || ||||| || | Sbjct 487519 GTTGATAATTCTTAGCACATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCG 487578 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAAT 518325 ||| || || || ||||| || || ||||| || || |||| || || | || | Sbjct 487579 TTGAGAGTCATTGAAATAAGCTGGCACAGTGATCACAGCATTGGTGACAGGGTGGCCCAA 487638 Query 518326 ATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385 | |||| || || | ||||| ||| | | | ||| || ||||||| || ||| | Sbjct 487639 AAAAGCCTCAGCAGTCTCCTTCATCTTAGTCAGCACCATAGAAGAAATTTCCTCAGGGTA 487698 Query 518386 ATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 518444 | |||| | || || || || || | | || || | |||| | Sbjct 487699 GAAA-GCTTTTTTCTCCCCTTTGTAGGACACCATTACCTTGGGCTTGCCTTCGTCATTGA 487757 Query 518445 TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 518504 | |||| ||| ||||| |||||| |||||||| || | |||||||| | || | Sbjct 487758 TTACTTGAAAAGGCCAAAGTTTCATGTCTGATTGCACTACAGGATCATTAAATTTCCTGC 487817 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 | || | ||||| |||||||| | ||| || ||||| || || | || | |||| Sbjct 487818 CGATCAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGG 487877 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 ||||||| ||||| || | || || || || || | || || ||||| ||||| | Sbjct 487878 CTGCATCCCCAATGAGCCGCTCGGTGTCCGTGAAGGCCACGTAGCTGGGAGTGGTGCGGT 487937 Query 518625 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 518684 | || || || || || || || || || || || | || | || || || || Sbjct 487938 TGCCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAACACCCCCACGCACGAGT 487997 Query 518685 AAGTTGTTCCTAAATCAATACCAATAGCAATT 518716 | || || || | ||||| ||||| || ||| Sbjct 487998 AGGTGGTGCCCAGGTCAATGCCAATGGCCATT 488029 >seq1263 Length=3465875 Score = 118 bits (130), Expect = 8e-21 Identities = 357/546 (65%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||| |||||||| || | | | ||| |||| ||| |||||||| Sbjct 2191403 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCATTGAAG 2191462 Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | ||||||| ||| | ||| || || || | || || || |||| ||||| Sbjct 2191463 AAGTCCTGTAGAAGTT-TCTGAATCTTGGGGATGCGGGTAGAACCACCCACTAGGACAAT 2191521 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| || || ||||| || | |||| | |||| || || || || || Sbjct 2191522 ATCATGAATCTGGGACTTGTCCAGCTTGGCATCCCGAAGGGCTTTCTCTACAGGGTCCAG 2191581 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | |||| ||| | | | |||||| ||| || | |||| || | || Sbjct 2191582 GGTGCCACGGAACAGGTCAGCATTCAATTCTTCAAATCGGGCACGGGTAATAGAGGTATA 2191641 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 | || |||||||| | | ||||||| ||||| | | || || |||||| || Sbjct 2191642 GAAGTCGATTCCTTCATAGAGTGAATCAATCTCAATACTGGCCTGGGTGCTAGAAGAGAG 2191701 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGATT 517964 | ||| |||||||||||||| || || | || | ||| | || ||| | || | | Sbjct 2191702 AGTACGCTTAGCACGTTCACAAGCAGTGCGCAGGCGTCGGACGGCCCTCTTGTTCTCACT 2191761 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 518022 ||| || | |||| || | |||||| ||| | | | | ||| | || | || Sbjct 2191762 GAT----GTCCTTCTTATGCTTGCGCTTGAATTCTGCGATAAA--ATGGTTGACCATTCG 2191815 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| ||||| || || || | || | ||| | |||| | | || | || | Sbjct 2191816 GTTGTCAAAGTCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTGACCTCAAAGAT 2191875 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||||||||| || | | | |||||| || ||||| || | ||||| || || Sbjct 2191876 TCCATCTTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAG 2191935 Query 518143 TACATT 518148 ||| || Sbjct 2191936 TACGTT 2191941 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||| || |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 2192047 TTTTTGTCTAAACCGTAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 2192106 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || ||||| || Sbjct 2192107 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAA 2192166 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || | ||| |||| Sbjct 2192167 GCAGGTACTGTGACAACAGCAT 2192188 Score = 93.3 bits (102), Expect = 3e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || |||||| || ||||| || || |||||| |||| | || || ||||| || |||| Sbjct 2192983 CACCAAAAACCGTGTTGGTCGGGTTCATTGCAACTTGGTTCTTTGCAGCATCACCGATCA 2193042 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 |||| || || ||||| | ||||| || || || || || ||||||||||| | Sbjct 2193043 ATCGTTCCGTGTCAGTAAAAGCGACATAGCTCGGGGTGGTTCGGTTTCCTTGATCATTGG 2193102 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 | || ||||| ||||| |||| || | ||||| ||||| | || || || | || Sbjct 2193103 CTATTATTTCCACTTTTCCATGCTGGAAAACACCCACACACGAGTAGGTGGTGCCAAGAT 2193162 Query 518700 CAATACCAA 518708 |||| |||| Sbjct 2193163 CAATGCCAA 2193171 >seq2056 Length=12192300 Score = 109 bits (120), Expect = 4e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || ||| |||| |||||||| ||||||||||| || ||| | || || ||| | Sbjct 10035475 TGTACACTTATTCTGACTGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 10035416 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||||||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 10035415 GTGGTTGGAAGAGACAAATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 10035356 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 10035355 GAAGCTTCTCATAAA 10035341 >seq323 Length=4575028 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| ||||| ||||| ||||||||| | ||| || | || || Sbjct 1698235 TGTCGTAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATATTCGCAAAGTCAT 1698176 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || ||||| ||| | || ||| ||||| || || ||||||||||| || || Sbjct 1698175 TCATTACGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCG 1698116 Query 367113 TGATGGA 367119 |||||| Sbjct 1698115 GGATGGA 1698109 >seq842 Length=3867019 Score = 86.0 bits (94), Expect = 5e-11 Identities = 208/309 (67%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155 |||||| ||| ||| ||| |||| || ||| ||| ||| || || | || |||| Sbjct 2765715 TTTCTAGTTCGTTTCTAGTGTCAAT-GC-GCTCTTTGAGCTTCTTGTCCTCCTCGGCAAA 2765772 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212 | | ||| || ||| ||| || ||||||| |||||| | | |||||| Sbjct 2765773 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 2765826 Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 2765827 GTCATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCAC 2765883 Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326 |||||| ||||| |||| | ||||| ||||||||||| || |||||||| | | Sbjct 2765884 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 2765943 Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386 |||||| || || || || || ||| ||||||| | | ||| ||||| || || Sbjct 2765944 AGCAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAAAAGGTGATTGTCTTTCGTCAAGGG 2766003 Query 517387 TCGTTCACC 517395 ||||||||| Sbjct 2766004 TCGTTCACC 2766012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780714866321902