Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1435 141 2e-28 seq1613 140 7e-28 seq158 113 1e-19 seq1495 109 1e-18 seq1472 104 5e-17 seq1408 100 6e-16 >seq1435 Length=8499281 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 996979 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 996920 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || || ||||| || || || || Sbjct 996919 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 996860 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||| ||||| || ||||| | ||||| Sbjct 996859 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 996800 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || |||| || || ||||| | ||||||| Sbjct 996799 CCGGTCAGGGTCTTCACGAAGATCTGCATTT 996769 >seq1613 Length=7518837 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 7389539 TCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7389480 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || ||||| || || ||||| Sbjct 7389479 GCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCC 7389420 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 7389419 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 7389360 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| |||| || || ||||| | ||||| Sbjct 7389359 GGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389318 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 7389767 TCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7389708 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || ||||| || || ||||| Sbjct 7389707 GCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCC 7389648 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 7389647 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 7389588 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| |||| || || ||||| | ||||| Sbjct 7389587 GGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389546 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 7389311 TCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7389252 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || ||||| || || ||||| Sbjct 7389251 GCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCC 7389192 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 7389191 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 7389132 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || ||||| | ||||| Sbjct 7389131 GGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389090 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 7389995 TCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7389936 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || ||||| || || ||||| Sbjct 7389935 GCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCC 7389876 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 7389875 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 7389816 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || ||||| | ||||| Sbjct 7389815 GGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7389774 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 7390223 TCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7390164 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || ||||| || || ||||| Sbjct 7390163 GCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCC 7390104 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 7390103 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 7390044 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || ||||| | ||||| Sbjct 7390043 GGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390002 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 7390451 TCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7390392 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || ||||| || || ||||| Sbjct 7390391 GCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCC 7390332 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 7390331 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 7390272 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || ||||| | ||||| Sbjct 7390271 GGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390230 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 7390679 TCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7390620 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || ||||| || || ||||| Sbjct 7390619 GCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCC 7390560 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || |||||||||||| |||||||| ||||| || || Sbjct 7390559 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAG 7390500 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || ||||| | ||||| Sbjct 7390499 GGTGATGGTCTTCCCGGTCAGGGTCTTCACGAAAATCTGCAT 7390458 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| || ||||| || || ||||| || | || || | |||||| || Sbjct 7390894 ACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 7390835 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || ||||| || || ||||| || || || || Sbjct 7390834 AGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 7390775 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| ||||| || ||||| | ||||| Sbjct 7390774 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTC 7390715 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 7390714 CCGGTCAGGGTCTTCACGAAAATCTGCAT 7390686 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| ||||||||||| || || || ||||| || | || || Sbjct 7389083 TCTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 7389024 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || ||||| || || ||||| Sbjct 7389023 GCGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCC 7388964 Query 195039 TTCTTTGTCTTG 195050 || ||||| || Sbjct 7388963 CTCCTTGTCCTG 7388952 >seq158 Length=5104435 Score = 113 bits (124), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||||||||| || |||||||| || | ||||| | || || || ||||| Sbjct 4734271 GTGCAGAGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCCTCCAGCTG 4734212 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || || || ||||| || || ||||| || |||||||| ||||| Sbjct 4734211 TTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 4734152 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 || || |||||||||||||| ||| || || || ||||| | ||||| || Sbjct 4734151 AGCTTTAACATTCTCAATGGTGTC---ACTGGGCTCAACGTCGAGGGTGATGGTCTTGCC 4734095 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 4734094 CGTCAGGGTCTTCACAAAGATCTGCAT 4734068 >seq1495 Length=1971954 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||||| || | ||||| | || || || ||||| Sbjct 943330 GTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCCTCCAGCTG 943389 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || || || ||||| || |||||||| || |||||||| ||||| Sbjct 943390 TTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATTTT 943449 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 || || ||||| |||||||| ||| || || || ||||| | ||||| || Sbjct 943450 AGCTTTAACATTCTCCATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 943506 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 943507 CGTCAGGGTCTTCACAAAGATCTGCAT 943533 >seq1472 Length=2102760 Score = 104 bits (114), Expect = 5e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| ||| | || |||||||| || | ||||| | || ||||| ||||| Sbjct 659097 GTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCTTCCAGCTG 659038 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || | || ||||| || || ||||| || |||||||| ||||| Sbjct 659037 TTTGCCGGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 658978 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 || || |||||||||||||| ||| || || |||||||| | ||||| || Sbjct 658977 AGCTTTAACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 658921 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 658920 CGTCAGGGTCTTCACAAAGATCTGCAT 658894 >seq1408 Length=2444343 Score = 100 bits (110), Expect = 6e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||||||||| || |||||| | ||||| || | | || Sbjct 1486432 AGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGT 1486491 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||||| || || ||||| |||| ||| || || |||||||| ||||| Sbjct 1486492 CCATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 1486551 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 | || || || || ||| | || || || || ||| | ||| || || || ||| Sbjct 1486552 CTATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTA 1486611 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||| | | ||| | ||||| Sbjct 1486612 ATGGTCTTCCCCGTAAGGGTTGTCATGAAAATCTGCAT 1486649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109450795590089