Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1263 122 7e-22 seq1408 98.7 8e-15 seq842 98.7 8e-15 >seq1263 Length=3465875 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || ||||| || || ||||||||||| || ||||| ||||| Sbjct 2192195 GTTACCAATGCTGTTGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACC 2192136 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||| | || |||||||| || |||||| Sbjct 2192135 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCT 2192076 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| || || Sbjct 2192075 GCTGCTATTGCTTACGG 2192059 Score = 105 bits (116), Expect = 5e-17 Identities = 221/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 |||||||| ||| | || || || |||| || ||| | || || ||| |||||| | Sbjct 2191728 ACTGCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCAGTATTGAGATT 2191669 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 |||||| | | ||| ||||| || | |||| ||||| | | ||| ||||||||| Sbjct 2191668 GATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGATTTGAAGAA 2191609 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | | |||| || || | || | || || ||||| ||| | | ||| | Sbjct 2191608 TTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCCTTCGGGATGCC 2191549 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | || || ||| | | ||||| ||||| || || ||||| ||||| | || || Sbjct 2191548 AAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTACCCGCATCCCC 2191489 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 || |||| || | || || ||| || |||||| ||| || | ||| | || | || Sbjct 2191488 AAGATTCAGAAACTTCTACAGGACTTCTT-CAATGGAAAAGAACTGAATAAGAGCATCAA 2191430 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGC 552238 || |||||||||||||| |||||||| Sbjct 2191429 CCCTGATGAGGCTGTTGCTTATGGTGC 2191403 Score = 93.3 bits (102), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||||| || |||| ||||| ||| Sbjct 2193169 GGCATTGATCTTGGCACCACCTACTCGTGTGTGGGTGTTTTCCAGCATGGAAAAGTGGAA 2193110 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || |||||||||||||| ||| |||| || || ||||| |||| || || || Sbjct 2193109 ATAATAGCCAATGATCAAGGAAACCGAACCACCCCGAGCTATGTCGCTTTTACTGACACG 2193050 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 |||| || | |||||||| ||||| | |||| || || || || ||||| || Sbjct 2193049 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AACCCGACCAACACGG 2192992 Query 550176 TTTTTGATG 550184 |||||| || Sbjct 2192991 TTTTTGGTG 2192983 Score = 87.8 bits (96), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || || ||||| |||| ||||| | ||| | | ||| || ||||| || |||||| Sbjct 2190722 ACCAAGGATAACAATCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGT 2190663 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || || || |||||||| ||||| ||||| ||||||||||| ||| | ||||| || Sbjct 2190662 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 2190603 Query 552588 GCT 552590 ||| Sbjct 2190602 GCT 2190600 >seq1408 Length=2444343 Score = 98.7 bits (108), Expect = 8e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||||||| || ||| || | | ||||| |||| | || | |||||| Sbjct 1486441 ACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAGCATGTCCATCTTCC 1486500 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 | ||| || || ||||| || ||||||||||||||||||||||||||||| |||| || Sbjct 1486501 ATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCCTATCCTGG 1486560 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTA 563445 || || |||| || |||||||| | | | |||||||||| || || Sbjct 1486561 ATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCGAGAGTAATGGTCTTC 1486620 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| ||| | | |||||| ||||| Sbjct 1486621 CCCGTAAGGGTTGTCATGAAAATCTGCAT 1486649 >seq842 Length=3867019 Score = 98.7 bits (108), Expect = 8e-15 Identities = 101/131 (77%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 550374 CTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 ||||||||| || || |||| ||||||| | ||||||||||| ||||| ||||| Sbjct 2767945 CTTTTGTTGTTCTTTTAGGTTACCCATGCAGTTGTTACTGTACCAGCCTATTTCAATGAT 2767886 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 | ||||| || || || |||||||||||| |||||||||| | |||||| | | || Sbjct 2767885 GCCCAACGCCAGGCAACCAAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATC 2767826 Query 550493 ATCAATGAACC 550503 |||||||| || Sbjct 2767825 ATCAATGAGCC 2767815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029181399266830