Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1360 149 8e-31 seq1878 131 2e-25 seq1743 96.9 4e-15 >seq1360 Length=2821018 Score = 149 bits (164), Expect = 8e-31 Identities = 232/327 (71%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || || |||||||| |||||||||| ||| ||||| | || |||||||| ||||| Sbjct 2193046 GTTTCACAGACCAGCTCAGCCCCGCTGATGGTGGATGGGTTTCTGGGGGAGTCGGTAACT 2192987 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | |||| || || ||||||||| | ||||||||||||| ||||||| Sbjct 2192986 CTTCCCCTGAAGCTTCCTGCAGGAGAGAAGATCTATTCCATCACCTGGCTTCACAACGGA 2192927 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || |||| ||| || | ||| || | || || |||| | || | Sbjct 2192926 ACATCTATCGTCTTCATAGACCCAAATGACG-CACGA--------ATCCTGGTGACTGCT 2192876 Query 2058 CCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACC 2115 | |||| || ||| ||| ||| |||| |||||||||||| | || || ||||||| Sbjct 2192875 CGCAAAC--GGAAAGATGCACTGAACGTCACCCAGTCCTACTCCTTGCAGCTCAGCAACC 2192818 Query 2116 TAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACG 2175 | ||||| |||||| || | |||| |||| ||| | | |||| | | | | | Sbjct 2192817 TGACGATGGCAGACACAGGATTTTACAAAGCCCAGATAGGCACAGAGAACTC-TTCAGTG 2192759 Query 2176 -TTTCCAGCTACACGCTGAGGATCTTC 2201 ||||||| ||||| |||||||||||| Sbjct 2192758 TTTTCCAGTTACACTCTGAGGATCTTC 2192732 Score = 141 bits (156), Expect = 1e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || |||||| |||||||||| |||| ||| || ||||| Sbjct 2187656 ACTGAGGAACTTACAAGTTGCCAATCATTCTCAACTGTCTGTGAATGGGACTTGTGAGAT 2187597 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| ||||||||| ||| ||| |||| ||||||||||||| |||| ||| || || Sbjct 2187596 CCACCTGACCTGTACTGCGGAGAATCCAAATGACAACATCTTACTCAAGTGGCAGATCTC 2187537 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 || || || |||| || ||||| |||| | |||||||||||||| || || Sbjct 2187536 AGGAAACACATCTCTAAATGAAGCCAACATCACTATCTCCTGGGACCCCAAGACTTCCAA 2187477 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| ||| |||||| ||||| || | || || | |||||| | || ||| | ||||| Sbjct 2187476 TGAAGAGACCTACACCTGCATAGCTCAGAATCCTATCAGCAATTTATCCTTCTCTGTCTC 2187417 Query 2447 GGCCCAGA 2454 ||||||| Sbjct 2187416 TGCCCAGA 2187409 >seq1878 Length=733190 Score = 131 bits (144), Expect = 2e-25 Identities = 228/327 (70%), Gaps = 15/327 (5%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || || |||||||| ||||| |||| ||||||||| | || |||||||| ||||| Sbjct 379073 GTTTCACAGACCAGCTCAGCCCCGTTGATGGTGAATGGGTTTCTGGGGGAGTCGGTAACT 379132 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||| | |||| || || | ||| ||| | ||||||||||||| |||| || Sbjct 379133 CTTCCCCTGAAGCTTCCTGCAGGAGGGAACATCTATTCCATCACCTGGCTTCACAATGGA 379192 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || ||| ||| || | ||| || | || || |||| | || | Sbjct 379193 ACATCTATCATCTTCATAGACCCAAATGACG-CACGA--------ATCCTAGTGACTGCT 379243 Query 2058 CCGAAACTGGGCAAG--CGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACC 2115 || |||| || ||| ||| ||| || | |||||||||||| | || || || |||| Sbjct 379244 CCCAAAC--GGAAAGATGCACTGAACGTCGCCCAGTCCTACTCCTTGCAGCTCAGTAACC 379301 Query 2116 TAGAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACG 2175 | |||| ||||| || || ||||| ||| |||| || | |||| || | | | Sbjct 379302 TGACTATGGCAGACATAGGATCTTACAGAGCCATGATAGCCACAGAGA-CATCTTCAGTG 379360 Query 2176 -TTTCCAGCTACACGCTGAGGATCTTC 2201 ||||||| ||||| |||||||||||| Sbjct 379361 TTTTCCAGTTACACTCTGAGGATCTTC 379387 >seq1743 Length=1104777 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 177678 ACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAAAATATATCATCATCA 177737 ||||||||||| ||||| ||| |||||||||||||||| || | | || || | ||| Sbjct 101048 ACAAATGACACTGGGATCTCCATCCAGTGGTTCTTTAATAACCAGAGTCTA-CAGC-TCA 101105 Query 177738 CAGAAA--ATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGACCCGGTC--GAGAG 177793 |||| | || |||||| || |||| | | ||||||| |||||||| || ||| | Sbjct 101106 CAGAGAGGATGAAGCTGTCCCAGGACAACAGCACCCTCACCATAGACCCCATCAGGAGGG 101165 Query 177794 AGGATTTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATG 177838 ||||| ||| |||| ||||||||||||||||| ||| || Sbjct 101166 AGGATGCGGGGGATTATCAGTGTGAGGTCTCCAACCTGGTCAGTG 101210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629266154291320