Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1495 114 1e-20 seq158 100 2e-16 seq1435 87.8 1e-12 >seq1495 Length=1971954 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||||| || || | |||||| || || ||| |||||| || |||||||| || || Sbjct 943306 GCCGCCCCGCAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 943365 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| ||| || |||||||| ||||| ||||| || || | || Sbjct 943366 GAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGG 943425 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| || || ||| ||| ||| | || | ||| || Sbjct 943426 AATGCCCTCCTTGTCTTGGATTTTAGCTTTAACATTCTCCATGGTGTCACTGGGCTCAAC 943485 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || ||||||| || || ||||| |||||||| Sbjct 943486 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 943533 >seq158 Length=5104435 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||||| || || | |||||| || || ||| |||||| || |||||||| || || Sbjct 4734295 GCCGCCCCGCAGGCGGAGCACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGTCTGA 4734236 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| ||| || |||||||| ||||| ||||| || || | || Sbjct 4734235 GAGAGTGCGGCCGTCCTCCAGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGG 4734176 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| || || ||| ||| | | | || | ||| || Sbjct 4734175 GATGCCCTCCTTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAAC 4734116 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || ||||||| || || ||||| |||||||| Sbjct 4734115 GTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4734068 >seq1435 Length=8499281 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||||| || || || |||||| || || ||||||||||| Sbjct 997682 GCCACCCCTGAGACGGAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 997623 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || ||||| || || | ||| || || | ||| Sbjct 997622 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 997563 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || ||| | | | || | |||||| Sbjct 997562 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCCAC 997503 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || || || |||||||| Sbjct 997502 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 997455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927539318941