Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1723 87.8 3e-12 >seq1723 Length=12986255 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || || ||| | ||||||||||| || ||||| || |||||||| || || ||||| Sbjct 6656016 GGAGAACGGGTTGTAGCCTTTGCCGCAGTGGAAGGAATCTTTTTTTCTGGCTCTTTTGCA 6655957 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||| |||||||||||| | | | |||| |||||||| || |||||||| || || Sbjct 6655956 TCCATATTCTGGCTCAAG-AAACGAGGACTGATGCCCGGCCTCACATTTTCCAATGAACT 6655898 Query 25992 CATCAGCAGGGACGAGG 26008 || ||||| || |||| Sbjct 6655897 TATTAGCAGAGATGAGG 6655881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928819639916480