Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1263 102 5e-16 seq842 86.0 4e-11 >seq1263 Length=3465875 Score = 102 bits (112), Expect = 5e-16 Identities = 227/338 (67%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 |||| || | ||||||||||||||||||||||| |||| |||||| || || | | Sbjct 2191739 GACGCCTGCGCACTGCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAGGCCA 2191680 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | |||| ||||||| || | ||||||||| || | |||| |||||| | || Sbjct 2191679 GTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCC 2191620 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 ||||||||| | | |||| || || | || | || || || || ||| | Sbjct 2191619 GATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAAGCCC 2191560 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | | ||| | || || ||||| || || | ||||| ||||| || || || ||||| | Sbjct 2191559 TTCGGGATGCCAAGCTGGACAAGTCCCAGATTCATGATATTGTCCTAGTGGGTGGTTCTA 2191500 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAAT 475783 | | || || || || ||||| | || | | || ||||| ||| | | ||| Sbjct 2191499 CCCGCATCCCCAAGAT-TCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTGAAT 2191441 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | || |||||||| |||||||| ||||| || Sbjct 2191440 AAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 2191403 Score = 87.8 bits (96), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| || ||||| | ||| | || ||| || ||||| || || | Sbjct 2190722 ACCAAGGATAACAATCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCAGCCCCTCGT 2190663 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| || Sbjct 2190662 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 2190603 Query 476171 GCT 476173 ||| Sbjct 2190602 GCT 2190600 >seq842 Length=3867019 Score = 86.0 bits (94), Expect = 4e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || || || ||||| ||| || | ||||||||| |||| || || Sbjct 2766013 AGGTGAACGACCCTTGACGAAAGACAATCACCTTTTGGGAACTTTTGATCTGACTGGAAT 2765954 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 ||||||||||||| | || || || || |||||||| || ||||| || |||| ||||| Sbjct 2765953 TCCTCCTGCTCCCCGTGGGGTCCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG 2765894 Query 476155 TATTCTT 476161 |||||| Sbjct 2765893 CATTCTT 2765887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268086246855716