Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2012 367 1e-96 seq63 190 2e-43 seq1185 105 8e-18 >seq2012 Length=6040582 Score = 367 bits (406), Expect = 1e-96 Identities = 677/985 (69%), Gaps = 11/985 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||||| ||| ||| || ||||| || Sbjct 2131294 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCAAACTTATTGGC 2131235 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| | | | | || ||||||| || ||| || | || || ||||| || Sbjct 2131234 AAACAAGTGGTG--CATGC-GCAGCATCCAGTTCAAGTCACCTGCTCCAAAGACGCACAC 2131178 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | ||| || ||| |||| || ||||| | || || || | | ||||||||| Sbjct 2131177 AGAACGCACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCACCCTTGGAAATGTCACCTTC 2131118 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||| || || ||||| ||||||||||| |||| || || | Sbjct 2131117 AAAGTACTGCCACTTGACAAATCTAGCAATCGCATGCATGTCGGACATGTCATACTTATG 2131058 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || | || || ||||| || |||||||| || | || Sbjct 2131057 GCTTAAGGACAGCGAGCCTGGGACTTCAGGGATCCGCTGAAGAGTGGCCCAGAGATACTC 2130998 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| |||| | | || Sbjct 2130997 ATCCGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTCTGGATTTTTTCATTCTCTAG 2130938 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 ||||| || || || | || ||||| || || ||||| || || | || | Sbjct 2130937 AACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGCGT 2130878 Query 160472 GGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||||||| || ||||| | || | ||| || || | | Sbjct 2130877 TTCAAGAGGAGG-GTGCACTTTGTCAGTCCCTGTGTTTGTCAGCTTTCCATTTACGACTG 2130819 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| |||||||| | | || | | |||||| | || || ||||| ||| Sbjct 2130818 CATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCTCAGTTTCTAGGTTGT 2130759 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | || | ||| || |||| | |||| || || ||||| || || | ||||| | Sbjct 2130758 TTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 2130699 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | |||| || | || |||| ||||||||| | || |||| || |||||| || Sbjct 2130698 CCATACCACAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTCTGTAAAGGTCCTGCA 2130639 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | || ||||| ||||| ||||| || |||||||| ||| |||| || | || Sbjct 2130638 TGCAGTTGAGGTCAGCCTGAACGCGACTCCATGAGGCGTACACCACGCTCTCCAGCTGAC 2130579 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAACA 160827 ||||||||||||| ||| |||||| || |||| || |||| |||||| |||| | | Sbjct 2130578 TGGCCACAAAGACATTACTGAAACAGGATGCGATGCCAATCACCGCCGCCAAAAAGGA-A 2130520 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | |||| |||||| || | |||||| | ||||| ||| ||||||||||| Sbjct 2130519 TC--CTCTGATTTTCTGTCCACATGAATGCAATAGAAATTCTGTGGCATGTAGATGGCCC 2130462 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | || ||||| || ||||| |||| Sbjct 2130461 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACGACTATAGAATATGCTATTGGAA 2130402 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 |||| | ||| || ||| |||| | | || || ||| ||||||| ||| || Sbjct 2130401 ACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGCCTCTTGATGAAAGAAG 2130342 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| || || Sbjct 2130341 TACAATCACTGGTCATGTTTATGTA 2130317 >seq63 Length=220577 Score = 190 bits (210), Expect = 2e-43 Identities = 222/300 (74%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 ||| || ||||| || || || || || ||||||||||| || | || || || ||||| Sbjct 189893 TCCTGAGATCTTCCCGGAACCAAAGGTATTGAAGAGGCAATTGTAACACCCCTCATCCTC 189834 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || |||||||||||| || || | |||||||| |||| || | ||| || ||||| | Sbjct 189833 CAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGAGTCCTAGCTGAGTGATGTTTAT 189774 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 |||||||||| ||| || || ||||| ||||||| || |||||||||| |||||| Sbjct 189773 CTTGTCTTTATAAGCAGGCTGGACCACAACCCCGTGGTCCTTGCTGAAGGTGATCATGTT 189714 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409 || ||| | || | ||| || |||||||| || || |||| || || | || || Sbjct 189713 TTCTGGGATCGTAGGCTTGATTTTCTGCCATGTCACAATCAAGACTTCCTGGGAAGTTTG 189654 Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 |||||| ||| | | ||||| || ||||||||||| ||| |||||||| || || || Sbjct 189653 CAGGGAGCATTTTAAGGAAGCAGGTGTGTTCAGCAGCACTCTTTCATCTTGGGTCACCAC 189594 >seq1185 Length=3570589 Score = 105 bits (116), Expect = 8e-18 Identities = 343/529 (65%), Gaps = 16/529 (3%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 1197703 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCCTCCACATGAATGAATGAATCTGCT 1197762 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || |||||||| |||| || || || || | ||| | ||||| | | || Sbjct 1197763 GGAATATAATTTTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCC 1197822 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 | || | ||||| |||||||| |||||| || |||| || ||||||||||| | Sbjct 1197823 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATGGAGTTTTCAAAGGAA 1197882 Query 176412 AAATAGAACTTACATGAGCCTAACAATGGT----ATTAGGTCCGGATTGGAGATGTGGTT 176467 | ||| || || || | || ||||| || | | || | | | Sbjct 1197883 AGATAAAATTTGCAAG----TAGATATGGTAGGAATCAAATTTTTATCATTCACATACTC 1197938 Query 176468 TCCAACAGCATTGCCGTATACGTGTNNNNNNNNATATTTTTG--TAACTCCATGTAATAT 176525 ||||| || ||||| ||| || | ||| ||||| || || ||||||| Sbjct 1197939 TCCAAATGC-TTGCC-CATAGGTATGGATTTCAATACTTTTGCTTAGTTCATTGTAATAC 1197996 Query 176526 TGCGATCTGACGTAATCTGGGTTCCAATTGCTTACTACCCAACATATGAGTTTATCCTTT 176585 | ||| ||| || |||||||| || ||||| ||||| || | | || || || Sbjct 1197997 TTGACCCTGGCGTGCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTTCTCTTTG 1198056 Query 176586 TGTGGGA--TCCGTGATGTAGTGGTAGTATTTTTAATAATCAATGAACCATAAGGTACAG 176643 ||| | || ||| || ||| | | | | |||| | |||||||| || Sbjct 1198057 CTTGGCACTTCAAACATGAAGGGGT--TTGTGCTCACTGTCAAGAAGCCATAAGGCACTT 1198114 Query 176644 TGATATCTGAATCCTGTCTATAAGTTACTGTAATATTAAAGAGATGTTCCAAATCTATCT 176703 ||||||||| || | | |||||| | || | ||| || || || || | | | ||| Sbjct 1198115 GGATATCTGAGTCGCGGCGATAAGTCAGAGTCAGATTGAACAGGTGCTCAATACCACTCT 1198174 Query 176704 TTTTAGGACTGTTACTGGGGGATTCAAAATTTATCCAGATCCATTTTTG 176752 ||| || ||| | |||| ||||| ||||| |||||||||||||| || Sbjct 1198175 TTTGGGGTGTGTGAGTGGGTGATTCCAAATTCATCCAGATCCATTTCTG 1198223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577203564574920