Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1020 86.0 7e-12 seq1723 82.4 9e-11 >seq1020 Length=3688603 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || || ||||| ||||| ||| | ||||| ||||||| Sbjct 998082 TCTCAGACAGAGACAGGTACCCCGTACATGCTCTACAAAGATTCCTGTAATCGGAAGAGT 998023 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| ||||||| ||||| || ||||| ||||| ||||| |||| || Sbjct 998022 AACCAGCAGAACCTGGGAACGATCAAATGCAGCAATCTATGCACAGAAATAGTAGAATAT 997963 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 997962 ACCAGCAAAGATGAG 997948 >seq1723 Length=12986255 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 |||||||||||||||||||| || ||| || || |||||||| ||||||||||||||| Sbjct 6654618 AATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAG 6654559 Query 65503 CGAGTTGGGGACTAT 65517 |||| || || ||| Sbjct 6654558 AGAGTAGGCGAGTAT 6654544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553440420960