Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1408 100 6e-16 >seq1408 Length=2444343 Score = 100 bits (110), Expect = 6e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| | || ||| || | || || |||| Sbjct 1486422 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGAT-TGTTGTAGTCAG 1486480 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || | || |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 1486481 ACAAAGCATGTCCATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 1486540 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| |||| || || || |||| ||| ||| | ||| | | ||| | Sbjct 1486541 GAATTCCTTCCCTATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAA 1486600 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||||||||| || || || | ||| | || || |||||||| || Sbjct 1486601 CCTCGAGAGTAATGGTCTTCCCCGTAAGGGTTGTCATGAAAATCTGCATCTT 1486652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984452666220450