Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1408 102 1e-16 seq158 84.2 4e-11 >seq1408 Length=2444343 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||| | || || | | || || || || Sbjct 1486422 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGA 1486481 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||| ||| || |||||||| || | ||| || || ||||| || Sbjct 1486482 CAAAGCATGTCCATCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1486541 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| |||| || || || |||| ||| ||| ||||| | | ||| || Sbjct 1486542 AATTCCTTCCCTATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAAC 1486601 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||||||||| || || || | ||| | ||||| |||||||| || Sbjct 1486602 CTCGAGAGTAATGGTCTTCCCCGTAAGGGTTGTCATGAAAATCTGCATCTT 1486652 >seq158 Length=5104435 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || || || | ||| | |||||| ||||| || ||||| | || || |||| ||| Sbjct 4734276 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAGTCTGAGAGAGTGCGGCCGTCCTCC 4734217 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||||| || |||||||| | | ||| ||||||||||| || || || || ||||| Sbjct 4734216 AGCTGTTTGCCGGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 4734157 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 |||||| ||| ||||| || || || | || || || || || ||||| || Sbjct 4734156 ATTTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACGTCGAGGGTGATGGTCTTG 4734097 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || | || |||||||| Sbjct 4734096 CCCGTCAGGGTCTTCACAAAGATCTGCAT 4734068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905111482128600