Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1603 96.9 1e-14 seq1540 84.2 6e-11 >seq1603 Length=1546321 Score = 96.9 bits (106), Expect = 1e-14 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || ||||||| ||||||||||| Sbjct 855956 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCCCCCATAGCATG 855897 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| || || || | | ||||| |||| || || ||||| Sbjct 855896 GAAAAAGAACTCGGTGGGGGTGAGGCCAGCCAGGTAGGAGTTCTCCACAAAGCCACGGCT 855837 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || ||| |||| | ||||| ||||| |||| || || | || |||| Sbjct 855836 CTCAGGCCCATAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAATCCAAATGG 855777 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 ||| ||||| || || ||||||||||| || | | | ||| | ||| |||| Sbjct 855776 GATCCGCTTGCCCTCCACGTTCTGCTGCCCGACGACAGCAATGACCTGGGAAA 855724 >seq1540 Length=1794854 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 448887 GCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTCGCAATTAAACATCATCCTGAT 448946 ||| | || ||||| || || ||||| ||| | | | ||| ||||| ||||||||| Sbjct 1185998 GCTTCACCTGAGGACATTAAAAAGGCTTATCATAAAGTGGCACTTAAATGGCATCCTGAT 1185939 Query 448947 AAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAAATTCAAAGAGATTTCTCAAGCTTAT 449006 ||||||||||| ||||||| ||| || ||| ||||||||||| | || | || ||| Sbjct 1185938 AAAAATCCAGAAAATAAAGAAGAAGCCGAGAGAAAATTCAAAGAAGTAGCTGAGGCATAT 1185879 Query 449007 GAAATTGTAACAAATAAAGAAAAA 449030 || | || ||||| | ||||| Sbjct 1185878 GAGGTATTATCAAATGATAAAAAA 1185855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471776735444279