Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1966 163 2e-34 seq1263 118 8e-21 seq2056 113 3e-19 seq323 98.7 7e-15 seq842 86.0 5e-11 >seq1966 Length=568079 Score = 163 bits (180), Expect = 2e-34 Identities = 934/1472 (63%), Gaps = 27/1472 (2%) Strand=Plus/Plus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || |||||||||||||||||||| || | ||||| || || || || ||||| || Sbjct 486572 GGCTGTTACATTAAGAATACCATTGGCGTCGATGTCAAAGGTCACCTCGATCTGAGGAAC 486631 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 ||||| | ||||| ||||| || || | ||| |||||| ||||| || Sbjct 486632 TCCTCTGGGTGCAGG-GGGATTCCAGTCAGGTCAAAGCGTCCCAGCAGGTTATTGTCCCG 486690 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | | || |||||| | | ||||| || | | || |||||||| || Sbjct 486691 TGTCATGGCCCTCTCGCCCTCGTACACCTGGATCAATACCCCTGGCTGGTTATCTGAGTA 486750 Query 281605 AGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 || ||||| | |||| | | || || || || | ||| | | || | | Sbjct 486751 GGTGGTAAAGA-TCTGCGTCTGCTTGGTGGGGATGGTGGAGTTGCGCTTGATCAGGACAG 486809 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | || || || || || || || || || || |||| ||||| | | | | Sbjct 486810 TCATCACGCCCCCCGCCGTCTCCAACCCTAGGGACAGGGGAGCCACATCCAACAAAAGCA 486869 Query 281724 TATTTTGAAGTTTTTCATCAGTTT-GACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || | |||||| | | | ||| ||| ||| ||||| || | ||||| ||| Sbjct 486870 GGTCCTGTACCTTTTCAGACTTGTCGCCCATCAA-AATGGCTGCCTGTACTGCAGCCCCA 486928 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || || || || ||||| || || | | | || || | || || || | | Sbjct 486929 TAGGCCACCGCCTCATCGGGGTTGATGCTCTTGTTGAGATCACGGCCGTTAAAGTAGTCC 486988 Query 281843 GAAAGAAGTTGTCTTACCTT-AGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || || ||| | ||| ||| ||||| | || || || ||||| ||||| ||||| Sbjct 486989 TGCAGCAGCC-TCTGAACTTTAGGGATACGGGTGGAGCCCCCTACTAAAACAATGTCATG 487047 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | | | ||||||| || | ||| | | | || || || || || ||| || Sbjct 487048 GATTTTAGCCTTATCCATCTTCGCATCACGAAGAGCCTTCTCCACAGGCTCCAGAGT-GC 487106 Query 281962 TC-TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA 282019 || |||||| ||||| ||| | ||||| || ||||| || || ||| | || || Sbjct 487107 TCCTAAACAGGTCTGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGACGTGTAGAA 487164 Query 282020 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 || || ||||| || | ||||||| ||| | | | || || || || || | Sbjct 487165 GTCGATGCCTTCAAAAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTGGATGACAGCGT 487224 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGAT 282134 | || || | || || || || | || | | | || |||| | |||| |||| Sbjct 487225 CCTCTTGGCCCTCTCGCAGGCGGTGCGCAGCCGCCTCACAGCCCGCTTGTTCTGACTGAT 487284 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 282194 || | || | ||| |||||||| ||||| ||| | | ||||| | || | Sbjct 487285 G----TCCTTCTTGTGTTTCCTCTTGAACTCTTCCACAAAGTGGCTCACAAGCCTGTTGT 487340 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 |||| || || || |||| | || | || | || || |||| | |||| |||| Sbjct 487341 CAAAGTCCTCTCCACCCAGGTGGGTGTCCCCAGCTGTGGCCTTTACCTCAAAAATCCCAT 487400 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | || | | || | | |||||| || || ||||||| |||||| || || |||| Sbjct 487401 CATCTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAGAACAT 487460 Query 282315 TCATTTCTT--TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 | ||| || | || ||| | | ||| ||||| |||| |||||||| || ||||| Sbjct 487461 GTCTCTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCTGTGGGTTC 487518 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 || |||||||| | ||||| ||||| ||||| |||||||| || ||||| || | Sbjct 487519 GTTGATAATTCTTAGCACATTGAGACCCGCAATCACACCTGCATCCTTGGTGGCCTGGCG 487578 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAAT 282492 ||| || || || ||||| || || ||||| || || |||| || || | || | Sbjct 487579 TTGAGAGTCATTGAAATAAGCTGGCACAGTGATCACAGCATTGGTGACAGGGTGGCCCAA 487638 Query 282493 ATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA 282552 | |||| || || | ||||| ||| | | | ||| || ||||||| || || | Sbjct 487639 AAAAGCCTCAGCAGTCTCCTTCATCTTAGTCAGCACCATAGAAGAAATTTCCTCAGG-GT 487697 Query 282553 ATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAA 282611 | | |||| | || || || || || | | || || | |||| | Sbjct 487698 AGAAAGCTTTTTTCTCCCCTTTGTAGGACACCATTACCTTGGGCTTGCCTTCGTCATTGA 487757 Query 282612 TAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTAC 282671 | |||| ||| |||||| |||||| |||||||| || | |||||||| | || | Sbjct 487758 TTACTTGAAAAGGCCAAAGTTTCATGTCTGATTGCACTACAGGATCATTAAATTTCCTGC 487817 Query 282672 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGG 282731 | || | ||||| |||||||| | ||| || ||||| | || | || | |||| Sbjct 487818 CGATCAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGG 487877 Query 282732 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 282791 ||||||| ||||| || | || || || || || | || || ||||| ||||| | Sbjct 487878 CTGCATCCCCAATGAGCCGCTCGGTGTCCGTGAAGGCCACGTAGCTGGGAGTGGTGCGGT 487937 Query 282792 TACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAA 282851 | || || || || || || || || || || || | || | || || || || Sbjct 487938 TGCCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAACACCCCCACGCACGAGT 487997 Query 282852 AAGTTGTTCCTAAATCAATACCAATAGCAATT 282883 | || || || | ||||| ||||| || ||| Sbjct 487998 AGGTGGTGCCCAGGTCAATGCCAATGGCCATT 488029 >seq1263 Length=3465875 Score = 118 bits (130), Expect = 8e-21 Identities = 357/546 (65%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||| |||||||| || | | | ||| |||| ||| |||||||| Sbjct 2191403 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCTTTTCCATTGAAG 2191462 Query 281837 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 || | ||||||| ||| | ||| || || || | || || || |||| ||||| Sbjct 2191463 AAGTCCTGTAGAAGTT-TCTGAATCTTGGGGATGCGGGTAGAACCACCCACTAGGACAAT 2191521 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| || || ||||| || | |||| | |||| || || || || || Sbjct 2191522 ATCATGAATCTGGGACTTGTCCAGCTTGGCATCCCGAAGGGCTTTCTCTACAGGGTCCAG 2191581 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | |||| ||| | | | |||||| ||| || | |||| || | || Sbjct 2191582 GGTGCCACGGAACAGGTCAGCATTCAATTCTTCAAATCGGGCACGGGTAATAGAGGTATA 2191641 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || |||||||| | | ||||||| ||||| | | || || |||||| || Sbjct 2191642 GAAGTCGATTCCTTCATAGAGTGAATCAATCTCAATACTGGCCTGGGTGCTAGAAGAGAG 2191701 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGATT 282131 | ||| |||||||||||||| || || | || | ||| | || ||| | || | | Sbjct 2191702 AGTACGCTTAGCACGTTCACAAGCAGTGCGCAGGCGTCGGACGGCCCTCTTGTTCTCACT 2191761 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189 ||| || | |||| || | |||||| ||| | | | | ||| | || | || Sbjct 2191762 GAT----GTCCTTCTTATGCTTGCGCTTGAATTCTGCGATAAA--ATGGTTGACCATTCG 2191815 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||| ||||| || || || | || | ||| | |||| | | || | || | Sbjct 2191816 GTTGTCAAAGTCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTGACCTCAAAGAT 2191875 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||||||||| || | | | |||||| || ||||| || | ||||| || || Sbjct 2191876 TCCATCTTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATCAG 2191935 Query 282310 TACATT 282315 ||| || Sbjct 2191936 TACGTT 2191941 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||| || |||| ||||||||||||||| ||||| || ||||| | ||| Sbjct 2192047 TTTTTGTCTAAACCGTAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCTAAGTACA 2192106 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || ||||| || Sbjct 2192107 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAA 2192166 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || || | ||| |||| Sbjct 2192167 GCAGGTACTGTGACAACAGCAT 2192188 Score = 89.7 bits (98), Expect = 4e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 || |||||| || ||||| || || | |||| |||| | || || ||||| || |||| Sbjct 2192983 CACCAAAAACCGTGTTGGTCGGGTTCATTGCAACTTGGTTCTTTGCAGCATCACCGATCA 2193042 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 |||| || || ||||| | ||||| || || || || || ||||||||||| | Sbjct 2193043 ATCGTTCCGTGTCAGTAAAAGCGACATAGCTCGGGGTGGTTCGGTTTCCTTGATCATTGG 2193102 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 | || ||||| ||||| |||| || | ||||| ||||| | || || || | || Sbjct 2193103 CTATTATTTCCACTTTTCCATGCTGGAAAACACCCACACACGAGTAGGTGGTGCCAAGAT 2193162 Query 282867 CAATACCAA 282875 |||| |||| Sbjct 2193163 CAATGCCAA 2193171 >seq2056 Length=12192300 Score = 113 bits (124), Expect = 3e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || ||| |||| |||||||| ||||||||||| || ||| | || |||||| | Sbjct 10035475 TGTACACTTATTCTGACTGAGGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGCCTTGGT 10035416 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||||||||| | ||||| |||||||| |||||||||||| | | |||||| | Sbjct 10035415 GTGGTTGGAAGAGACAAATATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTTCGA 10035356 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 10035355 GAAGCTTCTCATAAA 10035341 >seq323 Length=4575028 Score = 98.7 bits (108), Expect = 7e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| ||||| ||||| ||||||||| | ||| || | || || Sbjct 1698235 TGTCGTAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGATATTCGCAAAGTCAT 1698176 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| ||||| ||| | || ||| ||||| || || ||||||||||| || || Sbjct 1698175 TCATTACGGTGCTCCTAAGGAAATGGAATCATATTACCAGGAGATTGGTAGAGCTGGCCG 1698116 Query 131296 TGATGGA 131302 |||||| Sbjct 1698115 GGATGGA 1698109 >seq842 Length=3867019 Score = 86.0 bits (94), Expect = 5e-11 Identities = 208/309 (67%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322 |||||| ||| ||| ||| |||| || ||| ||| ||| || || | || |||| Sbjct 2765715 TTTCTAGTTCGTTTCTAGTGTCAAT-GC-GCTCTTTGAGCTTCTTGTCCTCCTCGGCAAA 2765772 Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 281379 | | ||| || ||| ||| || ||||||| |||||| | | |||||| Sbjct 2765773 CTTCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTCAGGCGATTTTG 2765826 Query 281380 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 281433 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 2765827 GTCATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCAC 2765883 Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493 |||||| ||||| |||| | ||||| ||||||||||| || |||||||| | | Sbjct 2765884 TCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGG 2765943 Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553 |||||| || || || || || ||| ||||||| | | ||| ||||| || || Sbjct 2765944 AGCAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAAAAGGTGATTGTCTTTCGTCAAGGG 2766003 Query 281554 TCGTTCACC 281562 ||||||||| Sbjct 2766004 TCGTTCACC 2766012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740524009457742