Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq2134 105 6e-18 seq1659 89.7 5e-13 >seq2134 Length=5697440 Score = 105 bits (116), Expect = 6e-18 Identities = 591/941 (63%), Gaps = 39/941 (4%) Strand=Plus/Minus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||| |||||||| | || || |||||||||||| | || || || || | Sbjct 5663314 AAGACCTTAGCTGCCATCGGGACAGGGTTTGACTGTGCCGGCGAGACTGAAATACAACTG 5663255 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| || || | | || ||||| | | || ||||||||||| || Sbjct 5663254 GTGCAGAGTCTCGGGGTGCCTCCGGAGAGGATTATCTACGCAAATCCTTGTAAACAAGTG 5663195 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | ||||| | |||| |||||||| ||||||| Sbjct 5663194 TCCCAGATTAAGTATGCTGCCAATAACGGAGTCCAGATGATAACTTTTGACAGTGAAGTC 5663135 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGAT--GCTAAGCTGGTACTGAGGATTAAAG 20561 ||| | | ||| ||| | |||| | | || ||| |||| || ||| | Sbjct 5663134 GAGTTGATGAAAGTTGCCAGG--GCACATTCAAAGGCAAAGTTGGTTTTGCGGACTGCTA 5663077 Query 20562 TGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCA 20621 ||||| || || ||| | | || ||||| || ||||| || | | || ||| Sbjct 5663076 CCGATGATTCCAAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACACTCAAAACCA 5663017 Query 20622 GCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCC 20681 || | || | ||||||| ||| || || | || | || || |||||||||| Sbjct 5663016 GCAGGCTTCTTTTGGAACAGGCGAAAGAACTAAATATTGACATCATTGGTGTCAGCTTCC 5662957 Query 20682 ACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGA 20741 || |||| |||||||||| || || || ||| ||||| |||| ||| | Sbjct 5662956 ACATGGGAAGTGGCTGCACTGACCCAGAGACTTTTGTGCCGGCCATCTCTGATGCCTGCT 5662897 Query 20742 GAGCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | | |||||| | || | ||| || || ||||||| || | ||||||||||| | Sbjct 5662896 GTGTCTTTGACATGGGGGCTGAGATTGGTTTCAACATGTATCTGCTTGATATTGGTGGTG 5662837 Query 20802 GCTTTCCCGGGATCA-ATGAGATTGAGCCAACTTTTGAGGACATTGCAGAAGTCATTAAC 20860 ||||||| || ||| | || || ||| | ||||| || | | || || || Sbjct 5662836 GCTTTCCTGG-ATCTGAGGATATAAAGCTTAAATTTGAAGAGGTCACCAGTGTAATCCAC 5662778 Query 20861 GCGGCCTTGGAAAGGCATTTTCCAGATGA--TGCCAACCTGACAATTATTGGTGAACCTG 20918 | || |||| | | ||||||| || || | ||| | | || | ||| || | Sbjct 5662777 CCAGCACTGGACAAGTATTTTCCGTCAGACTTGGGAG--TGAGAGTCATAGCTGAGCCAG 5662720 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAAG--TG 20976 |||| || ||| | | || || | || | || || | | ||||| ||||| || Sbjct 5662719 GCAGATAGTACCTTGCGTCAGCTTTCACGCTCGCAGTTAAGATCATTGCGAAAAAACTTG 5662660 Query 20977 TGTTGAAGACAC-------------TCCTGGAGATAA------------AAAGTTTATGT 21011 | || ||| || | || |||| | || ||||||| Sbjct 5662659 TATTAAAGGAACAAACAAGATGTGATGATGAAGATGAGTCGAGTGAACAAACCTTTATGT 5662600 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071 |||| || |||||||| || ||||| ||||| ||||| | | | | ||||| | | Sbjct 5662599 ATTACGTGAATGATGGAGTATATGGATCATTTAATTGCATCCTTTATGATCATGCACACC 5662540 Query 21072 CTATGCCTATGCTGCTTAAAGAAAAAC-GCCTTGAAGACAAAGACTATGTTTCTAGCATT 21130 | |||| | ||| | ||||| | | | || || || | ||| || ||||| Sbjct 5662539 TGAAGCCTCTTCTG-TAAAAGAGACCCAAACCAGATGAGAAGTATTATTCATCCAGCATA 5662481 Query 21131 TGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTT 21190 ||||| || | || || ||| | ||| |||||| | |||| ||| | |||| ||| | Sbjct 5662480 TGGGGACCGACGTGTGACGGCCTCGATCGCATTGCTGAGCGCTGTAACTTGCCCGAGATG 5662421 Query 21191 CAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231 || |||| ||| ||| | | |||||||||| ||| | ||| Sbjct 5662420 CAGGTGGACGATTGGATGCTCTTTGAAAACAGGGGTGTTTA 5662380 >seq1659 Length=1356223 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || || ||| | ||| |||||||| |||| ||| | || Sbjct 1160071 TCCAGCATATGGGGACCGACGTGTGACGGCCTCGATCGCATTGTTGAGCGCTGTAACTTG 1160130 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || |||||||| ||| | | |||||||||||||| ||||| | || | Sbjct 1160131 CCCGAGATGCAGGTGGGCGATTGGATGCTCTTTGAAAACATGGGTGCTTATA-CTGTTGC 1160189 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAG 21296 ||| |||| || || ||||| |||| | |||| | ||||||| || |||| Sbjct 1160190 TGCTGCTTCGACTTTCAACGGATTCCAGAGGCCAACTATCTACTATGTCATGTCAG 1160245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463533043708560