Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq1535 165 7e-36 >seq1535 Length=7940182 Score = 165 bits (182), Expect = 7e-36 Identities = 478/718 (67%), Gaps = 67/718 (9%) Strand=Plus/Plus Query 1071 CCACAGCTCTAGCTTCTGGTCTGAAAAAGAGTAGGTTTCTCTTGAGAGTTAAGG-AAGGC 1129 ||||||| |||||||| |||||||||| || |||| |||| || ||| || | ||||| Sbjct 5645695 CCACAGCCCTAGCTTCAGGTCTGAAAAGGA-TAGGCTTCTTCTG-GAGGCAATGTAAGGC 5645752 Query 1130 ATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAAGT 1189 ||||||||||| |||||||| | || ||| |||||||||| || || |||| |||| Sbjct 5645753 GTTTTAAAGAAACAGCTTAGAATAGAAGTCTCTAGGGCACTTACGTAGTCATCCAAAAGT 5645812 Query 1190 TTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCCGTGGTAG---- 1245 || | | || ||||| |||| ||||| || |||||| || |||| | Sbjct 5645813 TTCTTAGACAAGTTCTGTAATTCTACGATTA---TTGCTTGTATTTCTTTTGGTTGTAGC 5645869 Query 1246 ---TGGATGG---CCGTGGGAG-GAG-AGCAAGGCTCCGGAACAGCAGAGCAGGAACAGG 1297 | ||||| |||| ||| ||| | ||| | ||| |||||||||||||||||||| Sbjct 5645870 TGATAGATGGGTCCCGTATGAGAGAGCATCAAAGTTCCCAAACAGCAGAGCAGGAACAGG 5645929 Query 1298 GCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGCCCACACACCCCCACCTGCCCCA-- 1355 |||| || | ||| || | ||| ||| |||| | ||| || || Sbjct 5645930 GCAAACCTAGTGGATCCTGGAGAAAGAGAACGATGCTGTGA----GGCACATGAGGCAGC 5645985 Query 1356 TACCTTAACCTGCCCAAGCTTTCACCACCGAAGC------TGTGC-CGGACTGAGC---- 1404 |||| || ||| ||||| | ||| |||| || || |||| || Sbjct 5645986 TACCCCCGCCCACCCGAGCTTCAATCACTTAAGCCATCGTTGAGCAACCACTGGGCCAAG 5646045 Query 1405 CCCATCC--AGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCATCAATGG 1462 ||| ||| || ||| ||| ||| | || ||| | |||| || | || || Sbjct 5646046 CCCCTCCAGAGGCTTCCTCCCTGTGTGATGA-----GACAG--CCCA--AGAACCAGAGG 5646096 Query 1463 CTGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGCCGCCGCT 1522 | | ||||| | | ||||| |||| || || || ||||| | |||| | ||| Sbjct 5646097 CAGCAGGACGCAGTGGTACCTATATGGGAGACCATGGCGAGAGAGCACAAGGC--CTGCT 5646154 Query 1523 TTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTATATAAAG 1582 | ||| ||||| || || |||||||||||| || | || ||| ||||||||| Sbjct 5646155 TCAGCACCAGCTTCTTGAACCAGATGTGCTCGCCATGGTCTTCAGGA--GATATATAAAG 5646212 Query 1583 GGCTAGTTGTAAG---GAGGAGCACTAAAAGTACCGCCCACGGTAAA------GTCA--- 1630 ||| |||||| || || ||||| | || || ||||||| || ||| ||| Sbjct 5646213 GGCCAGTTGTGAGGAAGAAGAGCAATTAATGTCCCGCCCATGGCAAATTATTGCTCAGCT 5646272 Query 1631 -TTACTCAGAAAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCAAGGCTCGA 1688 || |||||||||| ||||||| || ||||| | | || | |||||| |||| || Sbjct 5646273 TTTCTTCAGAAAACACTTTCAAAATTCTGCCACCCAAGGCTGAGTGAAAGCAGGGCTGGA 5646332 Query 1689 AGGAAA---TGAAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATATACACA 1743 |||||| ||| |||||||| ||| | ||||||||| |||| || | || | ||||| Sbjct 5646333 AGGAAATGCTGAGGTTACCCTCAAGGTAGGCAGATGCCTGACTCAGTACACACACACA 5646390 Score = 138 bits (152), Expect = 1e-27 Identities = 334/494 (68%), Gaps = 45/494 (9%) Strand=Plus/Plus Query 287 AACAACTTACAGCAGAATTCTCGTACACAGAGGGCA-CTAATCTTAAGGCTCTTTGCATT 345 || |||| |||||||| ||||| |||| ||| || || | || ||||| | |||| Sbjct 5644001 AATAACTGACAGCAGAGTTCTC--ACACTGAGCTCATCTCTTTTTCAGGCTTCATACATT 5644058 Query 346 CCTGCCATTCAA-AAGGAACAGGGTCAACCACATGGTCTTCAGTGACCTTCCAGGCTTCA 404 ||| ||||| |||||| || ||||||| |||| ||| | |||||| | ||| | Sbjct 5644059 TCTGTCATTCTGTAAGGAATCGGTTCAACCAGATGGCCTTAAATGACCTACTGAGCTCTA 5644118 Query 405 GTGCCCACTAATTTCAGGCACTTTGAAAACATTTCTAAAACACACTGTATGAACACtttt 464 || || |||||| ||||||||| | ||||| | ||||| ||| Sbjct 5644119 -TG--------TTCCAGGCAGTTTGAAAACCATCGTAAAATGGTCAAGATGAATCTTTTA 5644169 Query 465 ttttGATAGCTGTCTGTAGGCATAGAAA------TGTCTGGTGCGCGTTGCAATTCAAGT 518 || | || | |||||||||||||||| | |||||||| ||| || | ||| Sbjct 5644170 CGTTCAAAGTTATCTGTAGGCATAGAAACTTCTGTTTCTGGTGCATTTTGAAAATTGAGT 5644229 Query 519 TTTTTGAGATGGTCCATGACATCAGTAAAA-CTATTTGTGTCATTAAAAAATGATTTGAT 577 || | ||| || || |||| ||||| || || || ||| || ||| |||| Sbjct 5644230 TTGTCGAGCTGTTCTATGAT----GTAAAGGCTCTTATCGTTATTTAATGATGGACTGAT 5644285 Query 578 GGCTCTAAAATAAGGCAGGATGGCTGAACTGTTGATGTTGTGTGGTGGCTGGGGGCTCAC 637 ||| | |||||||||||||||||||| |||||||||||| |||| ||| ||| ||| Sbjct 5644286 GGCCTTGAAATAAGGCAGGATGGCTGAGCTGTTGATGTTGCCTGGT-GCTTGGGAGTCAG 5644344 Query 638 AG--AAAAGCACTGCATG-CGGCACGTGCATG----ATTTTACTAATCCCTTATTCTCTT 690 || ||| |||| ||||| || || ||||| | |||| ||||||| Sbjct 5644345 AGGTGAAA------CATGACGGCAAGTCACTGTCGAATTTTTGCACTCCC---TTCTCTT 5644395 Query 691 TCTGCTTCTGTGGAAGGAGAG---GAAATGGGTGAGCATTAGTGTTGTAA-AGCAGTCAG 746 | | | |||||||||||| | |||| ||||||||||| | |||||| | ||| || Sbjct 5644396 TGTTCAGCTGTGGAAGGAGGGAGAGAAAAGGGTGAGCATTGGGTTTGTAATAACAGCTAG 5644455 Query 747 AAACCCTGATAGCT 760 ||| || || ||| Sbjct 5644456 AAATCCCAATGGCT 5644469 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 171 CACAAGATACAAAACAGGTTATCAGAAAAATTCAGTATAATTTATTAAATAATTTTCAAG 230 ||||| || ||| |||| |||| || |||||||| |||||||||||||||| ||| |||| Sbjct 5643680 CACAAAATCCAAGACAGATTATGAGGAAAATTCAATATAATTTATTAAATAGTTTCCAAG 5643739 Query 231 GGCTTCTTTAAGAAGCATTAAC 252 |||| || || ||||||||| Sbjct 5643740 GGCTCCTCCGAGGAGCATTAAC 5643761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438548120506000